YRC Public Data Repository - Protein Structure Prediction

Protein:	MT22_BRAJU
Organism:	Brassica juncea
Length:	80 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MT22_BRAJU.

Description	E-value	Query Range	Subject Range
gi\|33111957 - gi\|33111957\|emb\|CAE12162.1\| metallothionein-like protein [Quercus robur]	93.0	[0..1]	[80..22]
gi\|62733239 - gi\|62733239\|gb\|AAX95356.1\| F22G5.1-related [Oryza sativa (japonica cultivar-group)]	93.0	[0..24]	[79..609]
gi\|71040683, gi\|... - gi\|74476672\|gb\|ABA08414.1\| type 2 metallothionein [Arachis hypogaea], gi\|71040683\|gb\|AAZ20290.1\| typ...	77.0	[0..25]	[80..25]
gi\|47076858 - gi\|47076858\|dbj\|BAD18379.1\| type 2 metallothionein [Vigna angularis]	77.0	[0..25]	[80..25]
gi\|13491970 - gi\|13491970\|gb\|AAK28022.1\|AF279655_1 metallothionein-like protein [Typha latifolia]	77.0	[0..24]	[80..24]
gi\|62856977 - gi\|62856977\|gb\|AAY16439.1\| metallothionein-like protein [Betula platyphylla]	76.0	[0..1]	[80..1]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCCGGNCGC GSGCKCGNGC GGCKMYPDLG FSGESTTTET FVFGVAPAMK NQYEASGEGV  60
   61 AENDACKCGS DCKCDPCTCK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	43.244125
Match:	PF01439.9
Description:	No description for PF01439.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits