YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|30685413, gi|...
Organism: Arabidopsis thaliana
Length: 286 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30685413, gi|....

Description E-value Query
Range
Subject
Range
gi|26450253 - gi|26450253|dbj|BAC42243.1| putative f24l7 cyclin-dependent kinase inhibitor ACK2 [Arabidopsis thali...
278.0 [0..1] [286..1]

Back

Predicted Domain #1
Region A:
Residues: [1-113]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKYIRKSKI DGAGAGAGGG GGGGGGGESS IALMDVVSPS SSSSLGVLTR AKSLALQQQQ  60
   61 QRCLLQKPSS PSSLPPTSAS PNPPSKQKMK KKQQQMNDCG SYLQLRSRRL QKK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [114-229]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPIVVIRSTK RRKQQRRNET CGRNPNPRSN LDSIRGDGSR SDSVSESVVF GKDKDLISEI  60
   61 NKDPTFGQNF FDLEEEHTQR TTRESTPCSL IRRPEIMTTP GSSTKLNICV SESNQR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [230-286]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDSLSRSHRR RPTTPEMDEF FSGAEEEQQK QFIEKYNFDP VNEQPLPGRF EWTKVDD

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.01
Match: 1jsuC
Description: P27(KIP1) fragment 22-106
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle