YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|28393873, gi\|...
Organism:	Arabidopsis thaliana
Length:	236 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28393873, gi|....

Description	E-value	Query Range	Subject Range
gi\|56421641, gi\|... - gi\|56421641\|ref\|YP_148959.1\| peptide chain release factor 2 in translation [Geobacillus kaustophilus...	263.0	[0..3]	[233..96]
gi\|98660650, gi\|... - gi\|98660650\|dbj\|GAA02231.1\| unnamed protein product [Pelotomaculum thermopropionicum SI], gi\|1476790...	253.0	[0..3]	[233..101]
gi\|78223569, gi\|... - gi\|78223569\|ref\|YP_385316.1\| peptide chain release factor 2 [Geobacter metallireducens GS-15], gi\|78...	251.0	[0..3]	[233..126]
gi\|110549044, gi... - gi\|110600263\|ref\|ZP_01388488.1\| peptide chain release factor 2 [Geobacter sp. FRC-32], gi\|110549044\|...	251.0	[0..3]	[233..126]
gi\|91770222, gi\|... - gi\|91770222\|ref\|ZP_01272050.1\| Peptide chain release factor 2 [Psychrobacter sp. PRwf-1], gi\|9172069...	251.0	[0..3]	[234..96]
gi\|56964831, gi\|... - gi\|56964831\|ref\|YP_176562.1\| peptide chain release factor 2 [Bacillus clausii KSM-K16], gi\|56911074\|...	250.0	[0..3]	[232..96]
gi\|23099950, gi\|... - gi\|23099950\|ref\|NP_693416.1\| peptide chain release factor RF-2 [Oceanobacillus iheyensis HTE831], gi...	249.0	[0..3]	[233..96]
gi\|134300908, gi... - gi\|88947567\|ref\|ZP_01150538.1\| Peptide chain release factor 2 [Desulfotomaculum reducens MI-1], gi\|8...	249.0	[0..3]	[233..96]
gi\|15926431, gi\|... - gi\|15926431\|ref\|NP_373964.1\| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus N31... gi\|25299681 - pir\|\|C89848 peptide chain release factor 2 [imported] - Staphylococcus aureus (strain N315) gi\|82655989, gi\|... - gi\|82750458\|ref\|YP_416199.1\| peptide chain release factor 2 [Staphylococcus aureus RF122], gi\|826559... gi\|14246523, gi\|... - gi\|15923744\|ref\|NP_371278.1\| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus Mu5... gi\|251813724, gi... - gi\|251813724\|ref\|ZP_04828197.1\| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus ... gi\|253724907, gi... - gi\|253731382\|ref\|ZP_04865547.1\| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus ... gi\|156979082, gi... - gi\|156979082\|ref\|YP_001441341.1\| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus... gi\|221139411 - gi\|221139411\|ref\|ZP_03564210.1\| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus ... gi\|255005545 - gi\|255005545\|ref\|ZP_05144146.2\| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus ...	249.0	[0..3]	[233..96]
gi\|151220935, gi... - gi\|151220935\|ref\|YP_001331757.1\| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus... gi\|253315812 - gi\|253315812\|ref\|ZP_04839025.1\| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus ... gi\|253732798, gi... - gi\|253732798\|ref\|ZP_04866963.1\| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus ... gi\|147740283, gi... - gi\|90587058\|ref\|ZP_01242736.1\| Peptide chain release factor 2 [Staphylococcus aureus subsp. aureus J... gi\|221141228 - gi\|221141228\|ref\|ZP_03565721.1\| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus ... gi\|90428298, gi\|... - gi\|90582514\|ref\|ZP_01238277.1\| Peptide chain release factor 2 [Staphylococcus aureus subsp. aureus J... gi\|269202375\|ref... - peptide chain release factor 2 [Staphylococcus aureus subsp. aureus ED98]	249.0	[0..3]	[233..97]

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Predicted Domain #1

Region A:
Residues: [1-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAIRTMTNM ILREFIHHPL LLHSSSKSCQ SLLPCLRLTP LISPIHSNSR LVSVRCAAST  60
   61 SGGSGGDRKV SSRLSQVQQM LHEAEERASS AGNEPTPQIT LDNVTLNFAR SGGPGGQNVN 120
  121 KLNTKVDMRF NVKNAYWLSD RIREKILLTE KNRINKDGEL VISSTKTRTQ KGNIDDALEK 180
  181 LQAIIDAASY VPPPPSEEQK KKIVKLAAKA DNKRLKSKKV LSDKKSARRS RGSYDD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.69897
Match:	1gqeA
Description:	Polypeptide chain release factor 2 (RF2)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits