YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|79324661, gi\|...
Organism:	Arabidopsis thaliana
Length:	243 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|79324661, gi|....

Description	E-value	Query Range	Subject Range
FOLD1_ARATH - Bifunctional protein FolD 1, mitochondrial OS=Arabidopsis thaliana GN=FOLD1 PE=2 SV=1	329.0	[0..1]	[242..1]
FOLD_MAGMM - Bifunctional protein FolD OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=folD... sp\|A0LE04\|FOLD_MAGMM - Bifunctional protein FolD OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=folD...	282.0	[0..62]	[243..1]
gi\|84468380 - gi\|84468380\|dbj\|BAE71273.1\| putative tetrahydrofolate synthase [Trifolium pratense]	280.0	[0..12]	[242..2]
gi\|116058709 - gi\|116058709\|emb\|CAL54416.1\| Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclo...	279.0	[0..61]	[242..1]
FOLD_MOOTA - Bifunctional protein FolD OS=Moorella thermoacetica (strain ATCC 39073) GN=folD PE=3 SV=1	279.0	[0..61]	[243..1]
FOLD_STRPN - Bifunctional protein FolD OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) GN=fo... FOLD_STRPN - Bifunctional protein FolD OS=Streptococcus pneumoniae GN=folD PE=3 SV=1	276.0	[0..62]	[243..1]
gi\|55792546 - gi\|55792546\|gb\|AAV65369.1\| plastid 5,10-methylene-tetrahydrofolate dehydrogenase [Prototheca wickerh...	274.0	[0..24]	[242..24]
FOLD_RUEST - Bifunctional protein FolD OS=Ruegeria sp. (strain TM1040) GN=folD PE=3 SV=1	273.0	[0..61]	[243..1]
gi\|77172056, gi\|... - gi\|77409324\|ref\|ZP_00786027.1\| methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cycl... gi\|76585577, gi\|... - gi\|76799062\|ref\|ZP_00781254.1\| methenyltetrahydrofolate cyclohydrolase folD [Streptococcus agalacti... FOLD_STRA5 - Bifunctional protein FolD OS=Streptococcus agalactiae serotype V GN=folD PE=3 SV=1 FOLD_STRA3 - Bifunctional protein FolD OS=Streptococcus agalactiae serotype III GN=folD PE=3 SV=1 FOLD_STRA1 - Bifunctional protein FolD OS=Streptococcus agalactiae serotype Ia GN=folD PE=3 SV=1 FOLD_STRA3 - Bifunctional protein FolD OS=Streptococcus agalactiae serotype III (strain NEM316) GN=folD PE=3 SV=1 FOLD_STRA1 - Bifunctional protein FolD OS=Streptococcus agalactiae serotype Ia (strain ATCC 27591 / A909 / CDC SS... FOLD_STRA5 - Bifunctional protein FolD OS=Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R) GN... gi\|77405305, gi\|... - gi\|77405305\|ref\|ZP_00782401.1\| methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cycl... gi\|77159936, gi\|... - gi\|77414010\|ref\|ZP_00790182.1\| methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cycl... gi\|77412380, gi\|... - gi\|77412380\|ref\|ZP_00788690.1\| methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cycl...	273.0	[0..62]	[242..1]

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Predicted Domain #1

Region A:
Residues: [1-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMIARKALA SAHTKAFRLA TRDVHCFSSI LVSPPLVSLD LPENWIPYSD PPPPVSFETE  60
   61 QKTVVIDGNV IAEEIRTKII SEVGKMKKAV GKVPGLAVVL VGEQRDSQTY VRNKIKACEE 120
  121 TGIKSVLAEL PEDCTEGQII SVLRKFNEDT SIHGILVQLP LPQHLNESKI LNMVRLEKDV 180
  181 DGFHPLNVGN LAMRGREPLF VSCTPKGCVE LLIRTGVEIA GKNAVVIGRS NIVGLPMSLL 240
  241 LQA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.0
Match:	1b0aA
Description:	Methylenetetrahydrofolate dehydrogenase/cyclohydrolase; Tetrahydrofolate dehydrogenase/cyclohydrolase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits