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View Structure Prediction Details

Protein: gi|28059392, gi|...
Organism: Arabidopsis thaliana
Length: 355 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28059392, gi|....

Description E-value Query
Range
Subject
Range
gi|7487090, gi|7... - pir||T04971 hypothetical protein T16L1.30 - Arabidopsis thaliana, gi|7270302|emb|CAB80071.1| putativ...
264.0 [0..14] [355..14]

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Predicted Domain #1
Region A:
Residues: [1-152]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASASFSAVS SLSYQFRSKE AIFSSKASCF SSTALSGRRV FGSIKAAQVT SHENPRRRTQ  60
   61 NVEGDIFVDN TCIDCDTCRW MVPDLFTRVD NMSAVTKQPT CKEERLNALQ ALLSCPTGSI 120
  121 RTQTPPADIG EAQETFPLVV DKDTLPGVFH CG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.55
Match: 1ti2B
Description: Crystal Structure of Pyrogallol-Phloroglucinol Transhydroxylase from Pelobacter acidigallici
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [153-355]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FHSKKSYGAT SYLILHREGN ILVDSPRYVE KLAGKIEMKG GVRYMFLTHR DDVADHKKWA  60
   61 DRFKSTRILH SDDVEPSTSD VELKLEGSGP WSIYEDVELI HTPGHSEGSV CMFHKSLKAL 120
  121 FTGDHVIMTE SGLSILEQYN HGSVPLQLEN VEKLINLDFN WLIPGHGRRV HFKDGDEKAK 180
  181 NLEALVQKHR EKQLVSFSKS GKA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.0
Match: 1xm8A
Description: X-RAY STRUCTURE OF GLYOXALASE II FROM ARABIDOPSIS THALIANA GENE AT2G31350
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.411342240547828 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle