YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|28059263, gi\|...
Organism:	Arabidopsis thaliana
Length:	642 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28059263, gi|....

Description	E-value	Query Range	Subject Range
gi\|10092279, gi\|... - pir\|\|D96782 hypothetical protein F22H5.7 [imported] - Arabidopsis thaliana, gi\|10092279\|gb\|AAG12692....	656.0	[0..104]	[642..1]
CG32549-PE - This gene is referred to in FlyBase by the symbol Dmel\CG32549 (CG32549, FBgn0052549). It is a prote...	642.0	[0..91]	[639..23]
gi\|73998433 - gi\|73998433\|ref\|XP_863569.1\| PREDICTED: similar to Cytosolic purine 5-nucleotidase (5-nucleotidase c...	623.0	[0..121]	[639..6]
5NTC_MOUSE - Cytosolic purine 5'-nucleotidase OS=Mus musculus GN=Nt5c2 PE=1 SV=2	622.0	[0..121]	[639..6]
5NTC_BOVIN - Cytosolic purine 5'-nucleotidase OS=Bos taurus GN=NT5C2 PE=1 SV=1	622.0	[0..121]	[639..6]
gi\|114632612, gi... - gi\|114632620\|ref\|XP_001172551.1\| PREDICTED: 5'-nucleotidase, cytosolic II isoform 10 [Pan troglodyte...	622.0	[0..121]	[639..6]
gi\|55729305 - gi\|55729305\|emb\|CAH91388.1\| hypothetical protein [Pongo abelii] NT5C2 - 5'-nucleotidase, cytosolic II gi\|109090439, gi... - gi\|109090441\|ref\|XP_001113578.1\| PREDICTED: 5'-nucleotidase, cytosolic II isoform 3 [Macaca mulatta]... gi\|123983422, gi... - gi\|123998125\|gb\|ABM86664.1\| 5'-nucleotidase, cytosolic II [synthetic construct], gi\|123983422\|gb\|ABM... 5NTC_PONAB - Cytosolic purine 5'-nucleotidase OS=Pongo abelii GN=NT5C2 PE=2 SV=1	622.0	[0..121]	[639..6]
gi\|121583986, gi... - gi\|121583986\|ref\|NP_001073435.1\| 5'-nucleotidase, cytosolic II [Danio rerio], gi\|115528783\|gb\|AAI247...	621.0	[0..121]	[639..7]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEWFISRNP TFSTAFPSSC ITVVNPNFIL LSSEFDSYTP QCLFNSLTTT MRLSKRQLSL  60
   61 PLSLCFSTFS PRSRFHHFPG KYPAPRREFL HTTGTSQLCF KSSMEDQKPS ALSENVLQFH 120
  121 TVGSRDGCDV PHEWS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.486	c.2.1	NAD(P)-binding Rossmann-fold domains
View	Download	0.485	c.2.1	NAD(P)-binding Rossmann-fold domains
View	Download	0.462	d.15.1	Ubiquitin-like
View	Download	0.438	a.130.1	Chorismate mutase II
View	Download	0.436	d.79.1	YjgF-like
View	Download	0.402	a.118.8	TPR-like
View	Download	0.389	d.95.2	Homing endonucleases
View	Download	0.383	d.44.1	Fe,Mn superoxide dismutase (SOD), C-terminal domain
View	Download	0.358	a.1.1	Globin-like
View	Download	0.232	d.118.1	N-acetylmuramoyl-L-alanine amidase-like
View	Download	0.214	a.73.1	Retrovirus capsid protein, N-terminal core domain
View	Download	0.212	d.108.1	Acyl-CoA N-acyltransferases (Nat)
View	Download	0.205	a.45.1	Glutathione S-transferase (GST), C-terminal domain

Predicted Domain #2

Region A:
Residues: [136-642]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPEGGKKIDI SNQIFCNRSL NMKNIIAVGF DMDYTLAQYK SETFESLAYD GTVRKLVYDL  60
   61 GYPNELLEWT FDWNYMVRGL VLDKKRGNIL KMDRHKYVKV AYHGFRELSK EDKVEIYGSS 120
  121 LVRDSFDEPD YALIDTLFSL AEAYLFAQLV DFKDNNPEKV PKDVDYARMY KDVRAAVDLC 180
  181 HRDGTLKQMV AKEPNRYINE DTTIVPLIKM IRDSGRSTFL VTNSLWDYTN IVMNFLCGGR 240
  241 TVHGPHTCNF DWLQYFDVVI TGSAKPGFFH EDSRANLFEV EPQSGMLINT DNGTPMAQVG 300
  301 DPSPKILLKS KDKGCRVFQG GNVGHLHSLL SIESSSQVLY VGDHIYGDIL RSKKILGWRT 360
  361 MLVVPELEKE VELLWELRNM RKDLILMRNE RDSVEDKIHH LNWSLKFEDI NENNKHEMLS 420
  421 ALKDLESKRD KVRQSHQQAQ RECHQKFHKV WGQLMKTGYQ SSRFAHQVER FACLYTSQVS 480
  481 NLRLYSPDKY YRPSEDFMSH EFHLLPL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	179.0
Match:	2j2cA
Description:	No description for 2j2cA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits