YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|17064838, gi|...
Organism: Arabidopsis thaliana
Length: 489 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17064838, gi|....

Description E-value Query
Range
Subject
Range
gi|116311953 - gi|116311953|emb|CAJ86313.1| H0525G02.10 [Oryza sativa (indica cultivar-group)]
266.0 [0..1] [329..541]

Back

Predicted Domain #1
Region A:
Residues: [1-331]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGQCSSLSC CRNTSHKTAV LEAPDVDNGE SSEITDVPNF REYTLEQLKA ATSGFAVEYI  60
   61 VSEHGEKAPN VVYKGKLENQ KKIAVKRFTR MAWPDSRQFL EEARSVGQLR SERMANLLGC 120
  121 CCEGDERLLV AEFMPNETLA KHLFHWETQP MKWTMRLRVV LYLAQALEYC TSKGRTLYHD 180
  181 LNAYRVLFDE ECNPRLSTFG LMKNSRDGKS YSTNLAFTPP EYLRTGRITP ESVIYSFGTL 240
  241 LLDLLSGKHI PPSHALDLIR DRNLQTLTDS CLDGQFSDSD GTELVRLASR CLQYEARERP 300
  301 NTKSLVTALT PLQKETEVLS HVLMGLPHSG S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 56.30103
Match: 2qkwB
Description: No description for 2qkwB was found.

Predicted Domain #2
Region A:
Residues: [332-489]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSPLSPLGEA CSRRDLTAML EILEKLGYKD DEGVTNELSF HMWTDQMQES LNSKKKGDVA  60
   61 FRQKDFREAI ECYTQFIDGG MISPTVCARR SLCYLMSDMP KEALDDAIQA QVISPVWHVA 120
  121 SYLQSASLGI LGMEKESQIA LKEGSNLEAK MNGVPRVK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.045757
Match: 2q7fA
Description: No description for 2q7fA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle