YRC Public Data Repository - Protein Structure Prediction

Protein:	CYC_APIME
Organism:	Apis mellifera
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYC_APIME.

Description	E-value	Query Range	Subject Range
gi\|30178199, gi\|... - gi\|31202411\|ref\|XP_310154.1\| AGAP009537-PA [Anopheles gambiae str. PEST], gi\|30178199\|gb\|EAA05914.2\|... AGAP009537-PA - cytochrome c\|protein_coding\|3R:35606586:35606912:1\|gene:AGAP009537	153.0	[0..1]	[108..1]
CYC_SCHGR - (P00040) Cytochrome c	151.0	[0..2]	[108..1]
gi\|108879930, gi... - gi\|94468578\|gb\|ABF18138.1\| mitochondrial cytochrome c [Aedes aegypti], gi\|157106248\|ref\|XP_001649238...	151.0	[0..1]	[107..1]
CYC_APIME - (P00038) Cytochrome c	151.0	[0..2]	[108..1]
gi\|29841130 - gi\|29841130\|gb\|AAP06143.1\| SJCHGC06082 protein [Schistosoma japonicum]	150.0	[0..1]	[108..1]
CYC_MANSE - Cytochrome c OS=Manduca sexta PE=1 SV=2	150.0	[0..1]	[108..1]
CYC_CYPCA - (P00026) Cytochrome c iso-1/iso-2	150.0	[0..6]	[107..1]
gi\|220958374, gi... - gi\|220958374\|gb\|ACL91730.1\| Cyt-c-p-PA [synthetic construct], gi\|220949230\|gb\|ACL87158.1\| Cyt-c-p-PA... gi\|125985567\|ref... - GA14714-PA [Drosophila pseudoobscura], GA14714 [Drosophila pseudoobscura pseudoobscura] FBpp0311164, Cyt... - The gene Cytochrome c proximal is referred to in FlyBase by the symbol Dmel\Cyt-c-p (CG17903, FBgn00... CYC2_CERCA - Cytochrome c-2 OS=Ceratitis capitata PE=1 SV=2 gi\|194766359, gi... - gi\|194766359\|ref\|XP_001965292.1\| GF20853 [Drosophila ananassae], gi\|190617902\|gb\|EDV33426.1\| GF20853... gi\|125985567, gi... - gi\|54644871\|gb\|EAL33611.1\| GA14714 [Drosophila pseudoobscura pseudoobscura], gi\|125985567\|ref\|XP_001... gi\|194884379, gi... - gi\|194884379\|ref\|XP_001976244.1\| GG22763 [Drosophila erecta], gi\|190659431\|gb\|EDV56644.1\| GG22763 [D... gi\|194133974, gi... - gi\|195344550\|ref\|XP_002038844.1\| GM17197 [Drosophila sechellia], gi\|194133974\|gb\|EDW55490.1\| GM17197... gi\|194176632, gi... - gi\|195484024\|ref\|XP_002090531.1\| GE12757 [Drosophila yakuba], gi\|194176632\|gb\|EDW90243.1\| GE12757 [D... gi\|195579626, gi... - gi\|195579626\|ref\|XP_002079662.1\| GD24074 [Drosophila simulans], gi\|194191671\|gb\|EDX05247.1\| GD24074 ...	148.0	[0..1]	[108..1]
CYC_SARPE - (P12831) Cytochrome c	148.0	[0..2]	[108..1]
gi\|229351 - gi\|229351\|prf\|\|711086A cytochrome c	148.0	[0..6]	[107..1]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIPAGDPEK GKKIFVQKCA QCHTIESGGK HKVGPNLYGV YGRKTGQAPG YSYTDANKGK  60
   61 GITWNKETLF EYLENPKKYI PGTKMVFAGL KKPQERADLI AYIEQASK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.69897
Match:	1akkA
Description:	SOLUTION STRUCTURE OF OXIDIZED HORSE HEART CYTOCHROME C, NMR, MINIMIZED AVERAGE STRUCTURE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits