YRC Public Data Repository - Protein Structure Prediction

Protein:	BH085_ARATH
Organism:	Arabidopsis thaliana
Length:	352 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BH085_ARATH.

Description	E-value	Query Range	Subject Range
gi\|20127093 - gi\|20127093\|gb\|AAM10959.1\|AF488616_1 putative bHLH transcription factor [Arabidopsis thaliana]	275.0	[0..1]	[352..1]
gi\|38490127 - gi\|38490127\|gb\|AAR21673.1\| myc-like anthocyanin regulatory protein [Cornus chinensis]	233.0	[0..13]	[329..180]
gi\|46254749 - gi\|46254749\|gb\|AAS86307.1\| myc-like anthocyanin regulatory protein [Cornus suecica]	232.0	[0..13]	[345..180]
gi\|46254733 - gi\|46254733\|gb\|AAS86299.1\| myc-like anthocyanin regulatory protein [Cornus unalaschkensis]	231.0	[0..13]	[345..180]
gi\|46254741 - gi\|46254741\|gb\|AAS86303.1\| myc-like anthocyanin regulatory protein [Cornus cf. canadensis Xiang and ...	231.0	[0..13]	[345..180]
gi\|46254739 - gi\|46254739\|gb\|AAS86302.1\| myc-like anthocyanin regulatory protein [Cornus cf. canadensis Xiang and ...	231.0	[0..13]	[345..180]
gi\|46254745 - gi\|46254745\|gb\|AAS86305.1\| myc-like anthocyanin regulatory protein [Cornus cf. canadensis Xiang and ...	230.0	[0..13]	[345..180]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAMGEWSNN LGGMYTYATE EADFMNQLLA SYDHPGTGSS SGAAASGDHQ GLYWNLGSHH  60
   61 NHLSLVSEAG SFCFSQESSS YSAGNSGYYT VVPPTVEENQ NETMDFGMED VTINTNSYLV 120
  121 GEETSECDVE KYSSGKTLMP LETVV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [146-239]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENHDDEESLL QSEISVTTTK SLTGSKKRSR ATSTDKNKRA RVNKRAQKNV EMSGDNNEGE  60
   61 EEEGETKLKK RKNGAMMSRQ NSSTTFCTEE ESNC

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [240-352]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADQDGGGEDS SSKEDDPSKA LNLNGKTRAS RGAATDPQSL YARKRRERIN ERLRILQNLV  60
   61 PNGTKVDIST MLEEAVHYVK FLQLQIKLLS SDDLWMYAPI AFNGMDIGLS SPR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.045757
Match:	1am9A
Description:	SREBP-1a
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits