YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|42570725, gi|...
Organism: Arabidopsis thaliana
Length: 273 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42570725, gi|....

Description E-value Query
Range
Subject
Range
gi|91805412 - gi|91805412|gb|ABE65435.1| hypothetical protein At2g07773 [Arabidopsis thaliana]
379.0 [0..1] [273..1]
gi|37591112, gi|... - gi|37591112|dbj|BAC98914.1| hypothetical protein [Brassica napus], gi|112253910|ref|YP_717164.1| hyp...
284.0 [0..23] [271..10]
gi|633157, gi|10... - gi|633157|emb|CAA58667.1| orf263 [Brassica tournefortii], pir||S51155 hypothetical protein 263 - Bra...
226.0 [0..44] [248..36]

Back

Predicted Domain #1
Region A:
Residues: [1-147]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTFNQLIRH GREEKRRTDR TEVLVFGLLV TRIIRFVHSV LFPIPVFCSI KVLLDSFCSL  60
   61 PIINKLSKKW QLIWFYVISV ILCKSLFAVG YLWMDDLSRA ISQFYPVVSG GLGGGNTPMP 120
  121 PTNPSEGGLL EGYYAHENEH SHDQQRG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [148-273]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPFWSKEYKE SGSKRLFLNL EVEDQNTDTI GEQVKAESDK CEKIKAKIIA KTHELLVSEG  60
   61 YHIPDERDIE RAINVVMTEH EMIDIDRRKK RFYYLYSRLG KNGDKFWVEL LELLSDYDIN 120
  121 KSDSDD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle