YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|15226111, gi|...
Organism: Arabidopsis thaliana
Length: 307 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15226111, gi|....

Description E-value Query
Range
Subject
Range
gi|37591104, gi|... - gi|37591104|dbj|BAC98906.1| ribosomal protein L2 [Brassica napus], gi|112253902|ref|YP_717157.1| rib...
335.0 [0..1] [306..1]

Back

Predicted Domain #1
Region A:
Residues: [1-307]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPGRARALR QFTLSTGKSA GRNSSGRITV FHRGGGSKRL LRRIDLKRST SSMGIVESIE  60
   61 YDPNRSSQIA PVRWIKGGCQ KKMNTIEKFA PPRKILEPTT NTISGLFSFS FLPGKVDKRK 120
  121 VACFSPGLMA AYVVVGLPTG MPPLSSSKSA FASKGAGSTK TLVKDVFFSA FSSLKAKRET 180
  181 ASLAFASSFG FPRIAVAGAK PAFFAPRMRQ KVRGKSTFSL CEVQKGRTHS ILWAHRIKGK 240
  241 AGLSWQSFRR QDTLGLVGAA GHKKSKPKTD QGNLPAKPIG ERAKQLKALR GLRAKDGACK 300
  301 VDRAPVV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 72.045757
Match: 1vs6C
Description: No description for 1vs6C was found.

Predicted functions:

Term Confidence Notes
binding 0.141433535514844 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle