YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15226092, gi\|...
Organism:	Arabidopsis thaliana
Length:	777 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15226092, gi|....

Description	E-value	Query Range	Subject Range
ATPA_MARMM - ATP synthase subunit alpha OS=Maricaulis maris (strain MCS10) GN=atpA PE=3 SV=1	646.0	[0..273]	[776..1]
gi\|83944758, gi\|... - gi\|83944758\|ref\|ZP_00957124.1\| ATP synthase subunit A [Oceanicaulis alexandrii HTCC2633], gi\|8385154...	642.0	[0..273]	[776..1]
ATPA_CARHZ - ATP synthase subunit alpha OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-...	642.0	[0..273]	[776..1]
ATPA_RHIME - ATP synthase subunit alpha OS=Rhizobium meliloti GN=atpA PE=3 SV=1 ATPA_RHIME - ATP synthase subunit alpha OS=Rhizobium meliloti (strain 1021) GN=atpA PE=3 SV=1	641.0	[0..273]	[776..1]
gi\|237788629, gi... - gi\|237816167\|ref\|ZP_04595162.1\| ATP synthase F1, alpha subunit [Brucella abortus str. 2308 A], gi\|23... ATPA_BRUAB - ATP synthase subunit alpha OS=Brucella abortus biovar 1 (strain 9-941) GN=atpA PE=3 SV=1 ATPA_BRUA2 - ATP synthase subunit alpha OS=Brucella abortus (strain 2308) GN=atpA PE=3 SV=1 gi\|254730989 - gi\|254730989\|ref\|ZP_05189567.1\| F0F1 ATP synthase subunit alpha [Brucella abortus bv. 4 str. 292] ATPA_BRUAB - ATP synthase subunit alpha OS=Brucella abortus GN=atpA PE=3 SV=1 gi\|254689954 - gi\|254689954\|ref\|ZP_05153208.1\| F0F1 ATP synthase subunit alpha [Brucella abortus bv. 6 str. 870] gi\|254698105 - gi\|254698105\|ref\|ZP_05159933.1\| F0F1 ATP synthase subunit alpha [Brucella abortus bv. 2 str. 86/8/59... ATPA_BRUA1 - ATP synthase subunit alpha OS=Brucella abortus (strain S19) GN=atpA PE=3 SV=1	641.0	[0..273]	[776..1]
ATPA_BRUMB - ATP synthase subunit alpha OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=atpA PE=3 SV=1 ATPA_BRUME - ATP synthase subunit alpha OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) G... ATPA_BRUME - ATP synthase subunit alpha OS=Brucella melitensis GN=atpA PE=3 SV=1	640.0	[0..273]	[776..1]
gi\|84691576, gi\|... - gi\|84702330\|ref\|ZP_01016905.1\| ATP synthase subunit A [Parvularcula bermudensis HTCC2503], gi\|846915...	639.0	[0..273]	[777..1]
ATPA_SINMW - ATP synthase subunit alpha OS=Sinorhizobium medicae (strain WSM419) GN=atpA PE=3 SV=1	638.0	[0..273]	[776..1]
ATPA_BRUSU - ATP synthase subunit alpha OS=Brucella suis biovar 1 (strain 1330) GN=atpA PE=3 SV=1 ATPA_BRUSU - ATP synthase subunit alpha OS=Brucella suis GN=atpA PE=3 SV=1	638.0	[0..273]	[776..1]
gi\|94495686, gi\|... - gi\|94495686\|ref\|ZP_01302266.1\| ATP synthase alpha subunit [Sphingomonas sp. SKA58], gi\|94425074\|gb\|E...	636.0	[0..273]	[776..1]

Back

Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITRLFAQLV SLSIVTYWND AIVATNFSWL FITFFVMTFT FRTFSRYFKK PIIWTFYFFL  60
   61 CLIAFLLLWA ARIHINILFS FAFGDVYSFF MAGVFLFYGF GELLPIGSDS DVGEASWVVN 120
  121 PATGASGSGG NGWTESAAND PAREVSLAPF PLQLTHPVPF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [161-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAEPGSPDPV SPPPPIASFY SRIERAESLH AGNIELAEDL QRIQEMERNL ENERSPYRGR  60
   61 ELAARIDWEV RELEGKVARN RAWDMVRDAQ LDIWRQGLDQ ELVRQQENES RLEER

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.758	N/A	N/A	a.29.16	Description not found.
View	Download	0.708	N/A	N/A	a.48.5	Description not found.
View	Download	0.660	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.634	N/A	N/A	a.29.10	Description not found.
View	Download	0.608	N/A	N/A	a.29.13	Description not found.
View	Download	0.448	N/A	N/A	a.24.9	alpha-catenin/vinculin
View	Download	0.443	N/A	N/A	a.7.8	GAT domain
View	Download	0.435	N/A	N/A	a.61.1	Retroviral matrix proteins

Predicted Domain #3

Region A:
Residues: [276-777]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RAAELTNLFE SRIRNFYANF QVDEIGRVVS VGDGIAQVYG LNEIQAGEMV LFANGVKGMA  60
   61 LNLENENVGI VVFGGDTAIK EGDLVKRTGS IVDVPAGKAM LGRVVDAMGV PIDGKGALSD 120
  121 HEQRRVEVKA PGILERKSVH EPMQTGLKAV DSLVPIGRGQ RELLIGDRQT GKTTIAIDTI 180
  181 LNQKQINSRA TSESETMYCV YVAIGQKRST VGQLIQTLEE ANALEYSILV AATASDPAPL 240
  241 QFLAPYSGCA MGEYFRDNGM HALIIYDDLS KQAVAYRQMS LLLRRPPGRE AFPGDVFYLH 300
  301 SRLLERAAKR SDQTGAGSLT ALPVIETQAG DVSAYIPTNV ISITDGQICL ETELFYRGIR 360
  361 PAINVGLSVS RVGSAAQLKA MKQVCGSSKL ELAQYREVAA FAQFGSDLDA ATQALLNRGA 420
  421 RLTEVPKQPQ YAPLPIEKQI LVIYAAVNGF CDRMPLDRIS QYEKAIPNSV KPELLQALKG 480
  481 GLTNERKMEP DAFLKERALA LI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	179.0
Match:	2v7qA
Description:	No description for 2v7qA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits