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View Structure Prediction Details

Protein: CAP14_ARATH
Organism: Arabidopsis thaliana
Length: 312 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CAP14_ARATH.

Description E-value Query
Range
Subject
Range
CAP8_ARATH - Putative clathrin assembly protein At2g01600 OS=Arabidopsis thaliana GN=At2g01600 PE=2 SV=2
321.0 [0..5] [308..4]

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Predicted Domain #1
Region A:
Residues: [1-312]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRKMKLWRR VSGAIKDKLS LITATDEKFT AAVIKATSHN DVSMDIENVQ FIYRYIQSNP  60
   61 SSFKPIIRAV SLRVEHTRNW TVALKCLMLL HGLFFSGIMT VDSIGRLPFD LSGFGRRKSR 120
  121 FSRTGRFNIF VRAYFMFLDE RSILYYNKNM IRLEIIVKMQ RIVDSLMRIK PIGETPLVIE 180
  181 AMEYVISEVV LINGHICRGF AGFLSDVQSN MLEISSAEAD LAMNIVAKSL SQREKLFKYF 240
  241 EFCRGFGVTN AQETSNILRI TESQMIVLDK LLHIAPELDW KAAKVTPVTA ADMVDLVTSE 300
  301 ERSNTPSDFL TF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 61.221849
Match: 1hf8A
Description: Clathrin assembly lymphoid myeloid leukaemia protein, Calm
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.229007340928547 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle