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View Structure Prediction Details

Protein: gi|20197401, gi|...
Organism: Arabidopsis thaliana
Length: 612 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20197401, gi|....

Description E-value Query
Range
Subject
Range
PIN4_ARATH - Auxin efflux carrier component 4 OS=Arabidopsis thaliana GN=PIN4 PE=1 SV=1
647.0 [0..1] [612..1]

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Predicted Domain #1
Region A:
Residues: [1-252]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITWHDLYTV LTAVVPLYVA MILAYGSVQW WKIFSPDQCS GINRFVAIFA VPLLSFHFIS  60
   61 TNDPYAMNFR FVAADTLQKI IMLVLLALWA NLTKNGSLEW MITIFSLSTL PNTLVMGIPL 120
  121 LIAMYGTYAG SLMVQVVVLQ CIIWYTLLLF LFEYRGAKLL IMEQFPETGA SIVSFKVESD 180
  181 VVSLDGHDFL ETDAEIGNDG KLHVTVRKSN ASRRSLMMTP RPSNLTGAEI YSLSSTPRGS 240
  241 NFNHSDFYSV MG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [253-446]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPGGRLSNFG PADLYSVQSS RGPTPRPSNF EENNAVKYGF YNNTNSSVPA AGSYPAPNPE  60
   61 FSTGTGVSTK PNKIPKENQQ QLQEKDSKAS HDAKELHMFV WSSSASPVSD VFGGGAGDNV 120
  121 ATEQSEQGAK EIRMVVSDQP RKSGGDDIGG LDSGEGEREI EKATAGLNKM GSNSTAELEA 180
  181 AGGDGGGNNG THMP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [447-612]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTSVMTRLIL IMVWRKLIRN PNTYSSLIGL IWALVAYRWH VAMPKILQQS ISILSDAGLG  60
   61 MAMFSLGLFM ALQPKIIACG NSVATFAMAV RFITGPAIMA VAGIAIGLHG DLLRIAIVQA 120
  121 ALPQGIVPFV FAKEYNVHPT ILSTGVIFGM LIALPITLVY YILLGL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle