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View Structure Prediction Details

Protein: NIPL2_ARATH
Organism: Arabidopsis thaliana
Length: 223 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NIPL2_ARATH.

Description E-value Query
Range
Subject
Range
NIP1_ARATH - NEP1-interacting protein 1 OS=Arabidopsis thaliana GN=NIP1 PE=1 SV=2
193.0 [0..1] [221..13]

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Predicted Domain #1
Region A:
Residues: [1-149]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTTLSPAVE AEQIADSTID TVSRLIAGVF SGALTGIFAM AGAFTGAVTG AVAGRAAQYG  60
   61 VLRGAALGAV AGAILSVEVL EASRAYWYLE LSGSRGPSSM ADFVEQLFRG RLVDEQLMST 120
  121 MINSHHWQLR ISDVSYEERE DVYGELEAR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [150-223]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLSGDSLRKL PCYIMSSEMV RRQVTHCTIC LQDIKTGEIT RSLPKCDHTF HLVCVDKWLI  60
   61 RHGSCPICRQ AVKD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.045757
Match: 1x4jA
Description: Solution structure of RING finger in RING finger protein 38
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle