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View Structure Prediction Details

Protein: gi|20148499, gi|...
Organism: Arabidopsis thaliana
Length: 316 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20148499, gi|....

Description E-value Query
Range
Subject
Range
gi|57108027 - gi|57108027|ref|XP_544171.1| PREDICTED: similar to CG7857-PA [Canis familiaris]
208.0 [0..17] [313..115]

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Predicted Domain #1
Region A:
Residues: [1-230]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDASQEQQHE TVEEMLARHR QEIKQLQNKE TEMKKAAAKG SKAEQKAKKK QVEDDISKLS  60
   61 TKLKDKQLKE LASQGFSSSS SNNIAKDETT EKKGDIDTLV RAIAGVSVTA QQEHSKPSKS 120
  121 VKRREKRAKE EADREQRIKE EQSHVKSDRM VENAKLEKKL KPLGLTVSEI KPDGHCLYRA 180
  181 VENQLANRSG GASPYTYQNL REMAASYMRE HKTDFLPFFL SETEGDSNSG 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.221849
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [231-316]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAEERFEKYC REVESTAAWG SQLELGALTH CLRKHIKVYS GSFPDVEMGK EYRSGDDSSL  60
   61 MLSYHRHAFG LGEHYNSVVL VNNITG

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.24
Match: 1tffA
Description: Structure of Otubain-2
Matching Structure (courtesy of the PDB):

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Created and Maintained by: Michael Riffle