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View Structure Prediction Details

Protein: ESD4_ARATH
Organism: Arabidopsis thaliana
Length: 489 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ESD4_ARATH.

Description E-value Query
Range
Subject
Range
gi|34787206 - gi|34787206|emb|CAE46910.1| SUMO protease [Arabidopsis thaliana]
355.0 [0..1] [489..1]

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Predicted Domain #1
Region A:
Residues: [1-248]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAVAINRKR SDESFNFINQ QSTNPLRNSP YFQASKKRRF SFAMSEDSGK PASSNPTISR  60
   61 ISRYPDAKAP LRREIHAPSR GILRYGKAKS NDYCEKDANF FVRKYDDAKR SALEALRFVN 120
  121 KGKDFVDLGD EVEKEEVVSD DSSVQAIEVI DCDDDEEKKN LQPSFSSGVT DVKKGENFRV 180
  181 EDTSMMLDSL SLDRDVDNDA SSLEAYRKLM QSAEKRNSKL EALGFEIVLN EKKLSLLRQS 240
  241 RPKTVEKR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [249-489]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEVPREPFIP LTEDEEAEVY RAFSGRNRRK VLATHENSNI DITGEVLQCL TPSAWLNDEV  60
   61 INVYLELLKE RETREPKKYL KCHYFNTFFY KKLVSDSGYN FKAVRRWTTQ RKLGYALIDC 120
  121 DMIFVPIHRG VHWTLAVINN RESKLLYLDS LNGVDPMILN ALAKYMGDEA NEKSGKKIDA 180
  181 NSWDMEFVED LPQQKNGYDC GMFMLKYIDF FSRGLGLCFS QEHMPYFRLR TAKEILRLRA 240
  241 D

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.154902
Match: 2ckgA
Description: No description for 2ckgA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle