YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15159734, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	196 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15159734, gi|....

Description	E-value	Query Range	Subject Range
gi\|115258700, gi... - gi\|116254052\|ref\|YP_769890.1\| putative cobalamin adenosultransferase [Rhizobium leguminosarum bv. vi...	295.0	[0..5]	[196..1]
gi\|86283475, gi\|... - gi\|86359373\|ref\|YP_471265.1\| hypothetical protein RHE_CH03790 [Rhizobium etli CFN 42], gi\|86283475\|g...	293.0	[0..5]	[196..1]
gi\|25345921 - pir\|\|AG2998 conserved hypothetical protein Atu3593 [imported] - Agrobacterium tumefaciens (strain C5... gi\|17937300, gi\|... - gi\|17937300\|ref\|NP_534089.1\| hypothetical protein Atu3593 [Agrobacterium tumefaciens str. C58], gi\|1...	292.0	[0..5]	[196..1]
gi\|254713613 - gi\|254713613\|ref\|ZP_05175424.1\| ATP:cobalamin adenosyltransferase [Brucella ceti M644/93/1] gi\|148370350, gi... - gi\|148559093\|ref\|YP_001259792.1\| putative ATP:cob(I)alamin adenosyltransferase [Brucella ovis ATCC 2... gi\|254716033 - gi\|254716033\|ref\|ZP_05177844.1\| ATP:cobalamin adenosyltransferase [Brucella ceti M13/05/1] gi\|23348847, gi\|... - gi\|23502823\|ref\|NP_698950.1\| ATP:cob(I)alamin adenosyltransferase, putative [Brucella suis 1330], gi... gi\|225853411, gi... - gi\|225853411\|ref\|YP_002733644.1\| ATP:cobalamin adenosyltransferase [Brucella melitensis ATCC 23457],... gi\|161619893, gi... - gi\|161619893\|ref\|YP_001593780.1\| ATP:cob(I)alamin adenosyltransferase [Brucella canis ATCC 23365], g... gi\|163843997, gi... - gi\|163843997\|ref\|YP_001628401.1\| ATP:cob(I)alamin adenosyltransferase [Brucella suis ATCC 23445], gi... gi\|254704983 - gi\|254704983\|ref\|ZP_05166811.1\| ATP:cobalamin adenosyltransferase [Brucella suis bv. 3 str. 686] gi\|254708958 - gi\|254708958\|ref\|ZP_05170769.1\| ATP:cobalamin adenosyltransferase [Brucella pinnipedialis B2/94] gi\|254694603 - gi\|254694603\|ref\|ZP_05156431.1\| ATP:cobalamin adenosyltransferase [Brucella abortus bv. 3 str. Tulya... gi\|254700613 - gi\|254700613\|ref\|ZP_05162441.1\| ATP:cobalamin adenosyltransferase [Brucella suis bv. 5 str. 513]	288.0	[0..5]	[196..1]
gi\|189020614, gi... - gi\|189025042\|ref\|YP_001935810.1\| Protein of unknown function DUF80 [Brucella abortus S19], gi\|189020... gi\|82700735 - gi\|82700735\|ref\|YP_415309.1\| hypothetical protein BAB1_1976 [Brucella melitensis biovar Abortus 2308... gi\|254731146 - gi\|254731146\|ref\|ZP_05189724.1\| hypothetical protein Babob42_08116 [Brucella abortus bv. 4 str. 292] gi\|82616836 - gi\|82616836\|emb\|CAJ11932.1\| Protein of unknown function DUF80 [Brucella melitensis biovar Abortus 23... gi\|62290823, gi\|... - gi\|62290823\|ref\|YP_222616.1\| ATP:cob(I)alamin adenosyltransferase [Brucella abortus bv. 1 str. 9-941... gi\|254707502 - gi\|254707502\|ref\|ZP_05169330.1\| hypothetical protein BpinM_11149 [Brucella pinnipedialis M163/99/10]	288.0	[0..5]	[196..1]
gi\|17986376, gi\|... - gi\|17986376\|ref\|NP_539010.1\| adenosylcobalamin-dependent diol dehydratase gamma subunit [Brucella me... gi\|25345923 - pir\|\|AG3263 propanediol dehydratase (EC 4.2.1.28) [imported] - Brucella melitensis (strain 16M)	285.0	[0..1]	[194..9]
gi\|113727198, gi... - gi\|150397728\|ref\|YP_001328195.1\| ATP--cobalamin adenosyltransferase [Sinorhizobium medicae WSM419], ...	281.0	[0..5]	[196..1]
gi\|13473010, gi\|... - gi\|14023758\|dbj\|BAB50363.1\| mlr3485 [Mesorhizobium loti MAFF303099], gi\|13473010\|ref\|NP_104577.1\| hy...	281.0	[0..5]	[196..1]
gi\|15075665 - gi\|15075665\|emb\|CAC47220.1\| Conserved hypothetical protein, partial homology with a human cob(I)alam... gi\|15966394 - gi\|15966394\|ref\|NP_386747.1\| hypothetical protein SMc00731 [Sinorhizobium meliloti 1021]	280.0	[0..5]	[196..1]
gi\|27376487, gi\|... - gi\|27376487\|ref\|NP_768016.1\| hypothetical protein blr1376 [Bradyrhizobium japonicum USDA 110], gi\|27...	280.0	[0..5]	[196..1]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAADMVKLNK IYTRTGDKGT TALVSGPRRL KHDLRVEAYG TVDETNSAIG IARLHTSGLE  60
   61 TLDAMLFRIQ NDLFDLGADL ATPDNGEPLS YEPLRIVESQ VMRLENEIDE LNAALEPLTS 120
  121 FVLPGGSAAA ANLHMARTVC RRAERLMVEL SVTDNEIVSP AALKYANRLS DFLFVAARFT 180
  181 NEAGRADILW VPGKNR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.522879
Match:	2g2dA
Description:	No description for 2g2dA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits