YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25520839
Organism:	Agrobacterium tumefaciens
Length:	285 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25520839.

Description	E-value	Query Range	Subject Range
gi\|71849286, gi\|... - gi\|71909665\|ref\|YP_287252.1\| MotA/TolQ/ExbB proton channel [Dechloromonas aromatica RCB], gi\|7184928...	204.0	[0..54]	[273..2]
gi\|157799509, gi... - gi\|52698727\|ref\|ZP_00340135.1\| COG0811: Biopolymer transport proteins [Rickettsia akari str. Hartfor...	203.0	[0..56]	[276..16]
gi\|51459816, gi\|... - gi\|51473504\|ref\|YP_067261.1\| TolQ protein [Rickettsia typhi str. Wilmington], gi\|51459816\|gb\|AAU0377... gi\|13235454 - gi\|13235454\|emb\|CAC33747.1\| TolQ protein [Rickettsia typhi]	203.0	[0..55]	[276..15]
gi\|112774536 - gi\|112774536\|gb\|ABI20705.1\| putative MotA/TolQ/ExbB proton channel [Delftia sp. AN3]	202.0	[0..57]	[274..33]
gi\|25301391 - pir\|\|AI3013 tolQ Protein [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gi\|159141008, gi... - gi\|17937422\|ref\|NP_534211.1\| tolQ Protein [Agrobacterium tumefaciens str. C58], gi\|17742139\|gb\|AAL44...	202.0	[0..47]	[285..1]
gi\|71556307, gi\|... - gi\|71735754\|ref\|YP_275910.1\| tolQ protein [Pseudomonas syringae pv. phaseolicola 1448A], gi\|71556307...	202.0	[0..52]	[279..2]
gi\|50120309, gi\|... - gi\|50120309\|ref\|YP_049476.1\| colicin uptake protein TolQ [Pectobacterium atrosepticum SCRI1043], gi\|...	202.0	[0..57]	[281..2]
gi\|28871120, gi\|... - gi\|28871120\|ref\|NP_793739.1\| tolQ protein [Pseudomonas syringae pv. tomato str. DC3000], gi\|28854370... gi\|237800221 - gi\|237800221\|ref\|ZP_04588682.1\| MotA/TolQ/ExbB proton channel [Pseudomonas syringae pv. oryzae str. ... tr\|F3G1F2\|F3G1F2... - MotA/TolQ/ExbB proton channel OS=Pseudomonas syringae pv. pisi str. 1704B GN=PSYPI_00040 PE=3 SV=1 gi\|63255367, gi\|... - gi\|66044660\|ref\|YP_234501.1\| MotA/TolQ/ExbB proton channel [Pseudomonas syringae pv. syringae B728a]... tr\|Q87Y37\|Q87Y37... - TolQ protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=tolQ-2 PE=3 SV=1 gi\|213926186, gi... - gi\|213969188\|ref\|ZP_03397327.1\| MotA/TolQ/ExbB proton channel [Pseudomonas syringae pv. tomato T1], ...	200.0	[0..52]	[279..2]
gi\|7444163, gi\|3... - pir\|\|H71686 tolQ protein (tolQ) RP309 - Rickettsia prowazekii, gi\|3860870\|emb\|CAA14770.1\| TOLQ PROTE... gi\|15604178 - gi\|15604178\|ref\|NP_220693.1\| TOLQ protein (tolQ) [Rickettsia prowazekii str. Madrid E]	200.0	[0..55]	[276..15]
gi\|46143832 - gi\|46143832\|ref\|ZP_00133961.2\| COG0811: Biopolymer transport proteins [Actinobacillus pleuropneumoni... gi\|126096576, gi... - gi\|126207784\|ref\|YP_001053009.1\| colicin transport protein TolQ [Actinobacillus pleuropneumoniae L20...	200.0	[0..55]	[277..1]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKAYWQVS GYGKGVNGYG RTTSSVNTRL NRPVPYRAFG FGDWIFMEQA GLAAATHDVS  60
   61 LWALFMQAGF IVKFVMIGLI AASVWTWAIV FDKYVSFGKA KRQFDQFEQV FWSGQSLEEL 120
  121 YRTLAERQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [129-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVGLAAIFVS AMREWKKSFE RGARSPIGLQ MRIDRAMDVT IAREGEQYEA RLGSLATIGS  60
   61 AGPFIGLFGT VVGIMTSFQA IAGSKSTNLA VVAPGIAEAL LATAIGLVAA IPAVIAYNKF 120
  121 TADAHKLSAR MEGFADEFSA ILSRQIDEKL QTRQAAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	39.853872
Match:	PF01618.7
Description:	No description for PF01618.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits