YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|27435806
Organism:	Populus tremula x Populus tremuloides
Length:	83 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|27435806.

Description	E-value	Query Range	Subject Range
gi\|109505505 - gi\|109505505\|ref\|XP_001054024.1\| PREDICTED: similar to CDC28 protein kinase regulatory subunit 2 [Ra...	139.0	[0..3]	[77..103]
gi\|108879113, gi... - gi\|157109134\|ref\|XP_001650539.1\| cyclin-dependent kinases regulatory subunit. putative [Aedes aegypt...	137.0	[0..2]	[78..4]
CKS2_ARATH - Cyclin-dependent kinases regulatory subunit 2 OS=Arabidopsis thaliana GN=CKS2 PE=3 SV=1	135.0	[0..1]	[83..1]
cks-1 - cyclin-dependent kinase regulatory subunit status:Confirmed UniProt:Q17868 protein_id:AAF99866.1	135.0	[0..2]	[81..6]
gi\|54639561, gi\|... - gi\|54639561\|gb\|EAL28963.1\| GA22037 [Drosophila pseudoobscura pseudoobscura], gi\|125778035\|ref\|XP_001... gi\|54639561\|gb\|E... - GA22037-PA [Drosophila pseudoobscura], GA22037 [Drosophila pseudoobscura pseudoobscura] gi\|195157398, gi... - gi\|195157398\|ref\|XP_002019583.1\| GL12136 [Drosophila persimilis], gi\|194116174\|gb\|EDW38217.1\| GL1213...	134.0	[0..2]	[83..4]
CKS1_CAEBR - Cyclin-dependent kinases regulatory subunit OS=Caenorhabditis briggsae GN=cks-1 PE=3 SV=1 gi\|157772581 - gi\|157772581\|ref\|XP_001664355.1\| hypothetical protein CBG15632 [Caenorhabditis briggsae AF16]	134.0	[0..2]	[77..6]
gi\|76162581 - gi\|76162581\|gb\|AAX30511.2\| SJCHGC04279 protein [Schistosoma japonicum]	133.0	[0..3]	[82..1]
gi\|114051550, gi... - gi\|87248089\|gb\|ABD36097.1\| cyclin-dependent kinase regulatory subunit [Bombyx mori], gi\|114051550\|re...	132.0	[0..2]	[76..4]
gi\|30585357, gi\|... - gi\|60653171\|gb\|AAX29280.1\| CDC28 protein kinase regulatory subunit 1B [synthetic construct], gi\|6065...	131.0	[0..3]	[77..5]
gi\|66534763 - gi\|66534763\|ref\|XP_624975.1\| PREDICTED: similar to Cyclin-dependent kinase subunit 85A CG9790-PA [Ap...	131.0	[0..2]	[73..4]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQIQYSEKY LDDTFEYRHV VLPPEVAKLL IKNRLLSENE WRAIGVQQSR GWVHYAIHRP  60
   61 EPHIMLFRRP LNYQQQQDQA LVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.30103
Match:	1buhB
Description:	CksHs1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits