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View Structure Prediction Details

Protein: CIPKN_ARATH
Organism: Arabidopsis thaliana
Length: 482 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CIPKN_ARATH.

Description E-value Query
Range
Subject
Range
gi|25387051, gi|... - pir||A86427 probable serine/threonine kinase [imported] - Arabidopsis thaliana, gi|12320856|gb|AAG5...
439.0 [0..1] [482..1]

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Predicted Domain #1
Region A:
Residues: [1-345]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRTTPSRS TPSRSTPSGS SSGGRTRVGK YELGRTLGEG TFAKVKFARN VENGDNVAIK  60
   61 VIDKEKVLKN KMIAQIKREI STMKLIKHPN VIRMFEVMAS KTKIYFVLEF VTGGELFDKI 120
  121 SSNGRLKEDE ARKYFQQLIN AVDYCHSRGV YHRDLKPENL LLDANGALKV SDFGLSALPQ 180
  181 QVREDGLLHT TCGTPNYVAP EVINNKGYDG AKADLWSCGV ILFVLMAGYL PFEDSNLTSL 240
  241 YKKIFKAEFT CPPWFSASAK KLIKRILDPN PATRITFAEV IENEWFKKGY KAPKFENADV 300
  301 SLDDVDAIFD DSGESKNLVV ERREEGLKTP VTMNAFELIS TSQGL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 75.522879
Match: 1zmuA
Description: Catalytic and ubiqutin-associated domains of MARK2/PAR-1: Wild type
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [346-482]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLGSLFEKQM GLVKRKTRFT SKSSANEIVT KIEAAAAPMG FDVKTNNYKM KLTGEKSGRK  60
   61 GQLAVATEVF QVAPSLYMVE MRKSGGDTLE FHKFYKNLTT GLKDIVWKTI DEEKEEGTDG 120
  121 GGTNGAMANR TIAKQST

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.0
Match: 2ehbD
Description: No description for 2ehbD was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle