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View Structure Prediction Details

Protein: KPRS3_ARATH
Organism: Arabidopsis thaliana
Length: 411 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KPRS3_ARATH.

Description E-value Query
Range
Subject
Range
gi|51971799 - gi|51971799|dbj|BAD44564.1| phosphoribosyl pyrophosphate synthetase [Arabidopsis thaliana]
349.0 [0..38] [409..38]
gi|92885984 - gi|92885984|gb|ABE88004.1| ribose-phosphate pyrophosphokinase [Medicago truncatula]
336.0 [0..20] [409..9]
gi|157104790, gi... - gi|157104790|ref|XP_001648570.1| ribose-phosphate pyrophosphokinase 1, putative [Aedes aegypti], gi|...
334.0 [0..62] [410..1]

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Predicted Domain #1
Region A:
Residues: [1-97]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAISPANAT TAASLSLPQF SSTSSSLSSS SSPSFLNFKT ASVSNRCIKC GVRSLENHSG  60
   61 HRSLDFLSNG DPISLINPNS SSPITMAAAT SESGSKS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.528 d.58.18 Regulatory domain in the aminoacid metabolism
View Download 0.411 d.267.1 Description not found.
View Download 0.346 d.109.1 Actin depolymerizing proteins
View Download 0.339 d.21.1 Diaminopimelate epimerase-like
View Download 0.337 c.97.1 Cytidine deaminase-like
View Download 0.329 a.4.5 "Winged helix" DNA-binding domain
View Download 0.288 d.68.4 YhbY-like
View Download 0.271 a.74.1 Cyclin-like
View Download 0.262 c.84.1 Phosphoglucomutase, first 3 domains

Predicted Domain #2
Region A:
Residues: [98-411]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKRVCLFHSD ETRDLAERIV AKSDCIELRS INWKKFDDGF PNLFIQNAQG IRGQHVAFLA  60
   61 SFSSPAVIFE QLSVIYALPK LFVSSFTLVL PFFPTGTSER MEDEGDVATA FTLARILSNI 120
  121 PTSRGGPTSL VTFDIHALQE RFYFGDTILP CFESGIPLLK SRLQSLPDSD NISIAFPDDG 180
  181 AWKRFHKQLQ HYPTIVCNKV RMGDKRIVRI KEGDAEGRHV VIVDDLVQSG GTLIECQKVL 240
  241 AAHGAAKISA YVTHGIFPRS SWKRFKLDTK GDPAEGLSYF WITDSCGMTV KEVMNKPPFE 300
  301 VLSLAGSIAS ALQV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 87.522879
Match: 2h06A
Description: No description for 2h06A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle