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View Structure Prediction Details

Protein: CSLB3_ARATH
Organism: Arabidopsis thaliana
Length: 755 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSLB3_ARATH.

Description E-value Query
Range
Subject
Range
gi|9622880, gi|1... - gi|9622880|gb|AAF89964.1|AF200528_1 cellulose synthase-4 [Zea mays], gi|162461169|ref|NP_001105621.1...
745.0 [0..1] [754..246]

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Predicted Domain #1
Region A:
Residues: [1-73]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSSSSLPP LCEKISYKNY FLRVVDLTIL GFLFSLLLYR ILLMNQNNSV WVVAFLCESF  60
   61 FSFIWLLITS IKW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [74-521]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPASYKSYPE RLDERVHDLP SVDMFVTTAD PVREPPILVA NTLLSLLAVN YPANKLACYV  60
   61 SDDGCSPLTY FSLKEASKFA KIWVPFCKKY NIKVRAPFRY FLNPPAATES SEFSKDWEIT 120
  121 KREYEKLSRR VEDATGDSHW LDAEDDFEDF SNTKPNDHST IVKVVWENKG GVGVENEVPH 180
  181 FVYISREKRP NYLHHYKAGA MNFLVRVSGL MTNAPYMLNV DCDMYANEAD VVRQAMCIFL 240
  241 QKSMNSNHCA FVQFPQEFYD SNADELTVLQ SYLGRGIAGI QGPTYAGSGC FHTRRVMYGL 300
  301 SIDDLEDDGS LSSLATRKYL AEENLAREFG NSNEMVTSVV EALQRKPNPQ NTLANSLEAA 360
  361 QEVGHCHFEY QTSWGKTIGW LYESTAEDAN TSIGIHSRGW TSSYISPKPP AFLGAMPPGG 420
  421 PEAMLQQRRW ATGLLEVLFN KQSPLIGM

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.47
Match: 2d7iA
Description: No description for 2d7iA was found.

Predicted Domain #3
Region A:
Residues: [522-698]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FCRKIRFRQS LAYLYIFTWG LRSIPELIYC LLPAYCLLHN AALFPKGVYL GIVVTLVGMH  60
   61 CLYSLWEFMS LGFSVQSWFA SQSFWRIKTT CSWLFSIPDI ILKLLGISKT VFIVTKKTMP 120
  121 KTMSGSGSEK SQREVDCPNQ DSGKFEFDGS LYFLPGTFIL LVNLAALAGC SVGLQRH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [699-755]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGGGSGLAEA CGCILVVILF LPFLKGMFEK GKYGIPWSTL SKAAFLAVLF VVFSVGN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle