YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: FBW3_ARATH
Organism: Arabidopsis thaliana
Length: 539 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBW3_ARATH.

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
567.0 [0..2] [538..1179]

Back

Predicted Domain #1
Region A:
Residues: [1-55]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFECQERLE AANDQRSESG LLNTDLRIGN DGSVEIPNVK LCCQKKKGTL VPSGS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.39794
Match: 2pm6B
Description: No description for 2pm6B was found.

Predicted Domain #2
Region A:
Residues: [56-539]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQLLSDKDLS TTIIDLPQAL ISEILNCLDP KELGLVSCVS TYLHRLASEH HAWKEFYRER  60
   61 WGLPVVFGAA SSGLSDERSW KDLFVEREFR SRTFLGRYSI DTLYGHTEAV RTVFLLASAK 120
  121 LVFTSGYDSI VRMWDMEEGL SIAASKPLGC TIRALAADTK LLVAGGTDGF IHCWKSLDGL 180
  181 RNLFDLTGFQ KEKTEFRLWG HEGPITSLAL DMTSIFSGSW DMSVRIWDRS SMKCVKTLRH 240
  241 SDWVWGLAPH ETTLASTSGS DVYIWDVSSE TPLAIIPDAH EGTTYSLARS HTGDFLFTGG 300
  301 EDGGIKMFEI RRYGSETSVV LISQWMPHTS PVYSLSFEFP WLVSASGDGK LALIDVRKLL 360
  361 KTNRCAYSKR ISSSTVEPPQ RMLHGFGSNL FSVDVGYDRI VCGGEEGTVR IWNFTQALEI 420
  421 ERRTRALKGM RHENRMRRRR MQMEMNAKNG RPDQCSIAAH KNPINGERNR AWHSKRRASG 480
  481 KAKA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 80.39794
Match: 2ovpB
Description: No description for 2ovpB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle