YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15223019, gi\|...
Organism:	Arabidopsis thaliana
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15223019, gi|....

Description	E-value	Query Range	Subject Range
gi\|25407010, gi\|... - gi\|8439885\|gb\|AAF75071.1\|AC007583_7 Contains similarity to a mitochondrial ribosomal protein from Sa...	181.0	[0..1]	[142..1]
RM04_MAGGR - 54S ribosomal protein L4, mitochondrial OS=Magnaporthe grisea GN=MRPL4 PE=3 SV=1 RM04_MAGO7 - 54S ribosomal protein L4, mitochondrial OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8...	160.0	[0..34]	[142..116]
gi\|220950896, gi... - gi\|220957886\|gb\|ACL91486.1\| Rlc1-PB [synthetic construct], gi\|220950896\|gb\|ACL87991.1\| Rlc1-PB [synt... Rlc1-PB - The gene Rlc1 is referred to in FlyBase by the symbol Dmel\Rlc1 (CG9378, FBgn0014023). It is a prote...	160.0	[0..9]	[132..21]
AGAP002218-PA - \|protein_coding\|2R:17694497:17695450:1\|gene:AGAP002218 gi\|116132807, gi... - gi\|119112936\|ref\|XP_307966.3\| AGAP002218-PA [Anopheles gambiae str. PEST], gi\|116132807\|gb\|EAA03797....	159.0	[0..9]	[132..31]
gi\|85105905 - gi\|85105905\|ref\|XP_962058.1\| hypothetical protein [Neurospora crassa OR74A] gi\|32408325, gi\|... - gi\|32408325\|ref\|XP_324644.1\| hypothetical protein [Neurospora crassa], gi\|28923652\|gb\|EAA32822.1\| hy...	156.0	[0..35]	[137..89]
RM04_EMENI - 54S ribosomal protein L4, mitochondrial OS=Emericella nidulans GN=mrpl4 PE=3 SV=1 RM04_EMENI - 54S ribosomal protein L4, mitochondrial OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 11...	151.0	[0..8]	[134..70]
gi\|190405475 - gi\|190405475\|gb\|EDV08742.1\| 60S ribosomal protein L4, mitochondrial precursor [Saccharomyces cerevis... gi\|459259 - gi\|459259\|emb\|CAA83057.1\| mitochondrial ribosomal protein [Saccharomyces cerevisiae]	147.0	[0..26]	[133..55]
RM04_ASPTN - 54S ribosomal protein L4, mitochondrial OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=mrp...	147.0	[0..33]	[134..97]

Back

Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLTRFVGRR FLAAASARSE STTAAAAAST IRTPTNPLEE FFEFDRSQDE DKPVVYGRGW  60
   61 KASELRLKSW DDLQKLWYVL LKEKNMLMTQ RQMLQAQNMQ FPNPERIPKV RRSMCRIKHV 120
  121 LTERAIEEPD SRRSAEMKRM VNGM

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.33
Match:	1p85W
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits