YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|19528287
Organism:	Drosophila melanogaster
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|19528287.

Description	E-value	Query Range	Subject Range
gi\|50752777 - gi\|50752777\|ref\|XP_413740.1\| PREDICTED: similar to MGC68587 protein [Gallus gallus]	194.0	[0..4]	[217..46]
gi\|55742509, gi\|... - gi\|89273817\|emb\|CAJ83659.1\| novel protein [Xenopus tropicalis], gi\|55742509\|ref\|NP_001006696.1\| ubiq... gi\|55742509 - ref\|NP_001006696.1\| ubiquitin-conjugating enzyme E2Q (putative) [Xenopus tropicalis]	194.0	[0..4]	[217..159]
gi\|55233893, gi\|... - gi\|58396115\|ref\|XP_321673.2\| ENSANGP00000011559 [Anopheles gambiae str. PEST], gi\|55233893\|gb\|EAA008...	193.0	[0..1]	[217..173]
gi\|38014428, gi\|... - gi\|38014428\|gb\|AAH60407.1\| MGC68587 protein [Xenopus laevis], gi\|148223748\|ref\|NP_001083463.1\| hypot...	193.0	[0..5]	[217..160]
UB2Q2_BOVIN - Ubiquitin-conjugating enzyme E2 Q2 OS=Bos taurus GN=UBE2Q2 PE=2 SV=1	189.0	[0..4]	[217..133]
gi\|109484735 - gi\|109484735\|ref\|XP_001072896.1\| PREDICTED: similar to ubiquitin-conjugating enzyme E2Q 2 [Rattus no...	189.0	[0..5]	[217..389]
gi\|74001047 - gi\|74001047\|ref\|XP_535548.2\| PREDICTED: similar to CG2924-PC, isoform C [Canis familiaris]	188.0	[0..4]	[217..244]
FBpp0070397, CG2... - This gene is referred to in FlyBase by the symbol Dmel\CG2924 (CG2924, FBgn0023528). It is a protein... gi\|220952050 - gi\|220952050\|gb\|ACL88568.1\| CG2924-PA [synthetic construct]	188.0	[0..1]	[217..181]
gi\|26345138 - gi\|26345138\|dbj\|BAC36218.1\| unnamed protein product [Mus musculus]	188.0	[0..5]	[217..47]

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Predicted Domain #1

Region A:
Residues: [1-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDVRSTSKK DDMEVEHLAT LEKLRQSQRQ DYLKGSVSGS VQATDRLMKE LRDIYRSDAF  60
   61 KKNMYSIELV NESIYEWNIR LKSVDPDSPL HSDLQMLKEK EGKDSILLNI LFKETYPFEP 120
  121 PFVRVVHPII SGGYVLIGGA ICMELLTKQG WSSAYTVEAV IMQIAATLVK GKARIQFGAT 180
  181 KALTQGQYSL ARAQQSFKSL VQIHEKNGWF TPPKEDG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.0
Match:	1zuoA
Description:	Structure of Human Ubiquitin-Conjugating Enzyme (UBCi) Involved in Embryo Attachment and Implantation
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits