YRC Public Data Repository - Protein Structure Prediction

Protein:	SYNO_ARATH
Organism:	Arabidopsis thaliana
Length:	567 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYNO_ARATH.

Description	E-value	Query Range	Subject Range
gi\|2664210 - gi\|2664210\|emb\|CAA10904.1\| asparaginyl-tRNA synthetase [Arabidopsis thaliana]	559.0	[0..2]	[567..1]
SYN_CLOTE - Asparagine--tRNA ligase OS=Clostridium tetani (strain Massachusetts / E88) GN=asnS PE=3 SV=1 SYN_CLOTE - Asparagine--tRNA ligase OS=Clostridium tetani GN=asnS PE=3 SV=1	478.0	[0..97]	[567..6]
SYN_SALTI - Asparagine--tRNA ligase OS=Salmonella typhi GN=asnS PE=3 SV=3 gi\|29142358, gi\|... - gi\|29142358\|ref\|NP_805700.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica serova... SYN_SALTI - Asparaginyl-tRNA synthetase OS=Salmonella typhi GN=asnS PE=3 SV=3 gi\|16759869 - gi\|16759869\|ref\|NP_455486.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica serova... SYN_SALPA - Asparagine--tRNA ligase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=asnS PE=3 SV=1 SYN_SALPA - Asparagine--tRNA ligase OS=Salmonella paratyphi A GN=asnS PE=3 SV=1 gi\|213581037 - gi\|213581037\|ref\|ZP_03362863.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|213612501 - gi\|213612501\|ref\|ZP_03370327.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|213999484 - gi\|213999484\|ref\|ZP_03410219.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|238913227 - gi\|238913227\|ref\|ZP_04657064.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|205271988, gi... - gi\|205352207\|ref\|YP_002226008.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica se... gi\|206708194, gi... - gi\|207856391\|ref\|YP_002243042.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica se... gi\|213162084 - gi\|213162084\|ref\|ZP_03347794.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|213424614 - gi\|213424614\|ref\|ZP_03357397.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|194470581, gi... - gi\|194470581\|ref\|ZP_03076565.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica sero... gi\|194710132, gi... - gi\|194734630\|ref\|YP_002114055.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|197094351, gi... - gi\|197362874\|ref\|YP_002142511.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica se... gi\|197937846, gi... - gi\|198243330\|ref\|YP_002214926.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|205332405, gi... - gi\|205332405\|gb\|EDZ19169.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ... gi\|168237106, gi... - gi\|197289886\|gb\|EDY29247.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ... gi\|195631055, gi... - gi\|195631055\|gb\|EDX49641.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ... gi\|205341479, gi... - gi\|205341479\|gb\|EDZ28243.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ...	474.0	[0..107]	[567..15]
SYN_SALCH - Asparagine--tRNA ligase OS=Salmonella choleraesuis (strain SC-B67) GN=asnS PE=3 SV=1 SYN_SALCH - Asparaginyl-tRNA synthetase OS=Salmonella choleraesuis GN=asnS PE=3 SV=1 gi\|224582810, gi... - gi\|224582810\|ref\|YP_002636608.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica se... SYN_SALCH - Asparagine--tRNA ligase OS=Salmonella choleraesuis GN=asnS PE=3 SV=1	474.0	[0..107]	[567..15]
gi\|194450065, gi... - gi\|194450065\|ref\|YP_002044994.1\| asparaginyl-tRNA synthetase [Salmonella enterica subsp. enterica se... SYN_SALTY - Asparagine--tRNA ligase OS=Salmonella typhimurium GN=asnS PE=3 SV=2 gi\|197249609, gi... - gi\|197249609\|ref\|YP_002145920.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica ser... SYN_SALTY - Asparagine--tRNA ligase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=asnS PE=3... gi\|200390273, gi... - gi\|200390273\|ref\|ZP_03216884.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica sero... SYN_SALTY - Asparaginyl-tRNA synthetase OS=Salmonella typhimurium GN=asnS PE=3 SV=2 gi\|167993358, gi... - gi\|205328543\|gb\|EDZ15307.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ... lcl\|NC_016856.1_... - [gene=asnS] [protein=asparaginyl-tRNA synthetase] [protein_id=YP_005236722.1] [location=complement(1... gi\|205337229, gi... - gi\|205337229\|gb\|EDZ23993.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ... gi\|205346905, gi... - gi\|205346905\|gb\|EDZ33536.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ... gi\|194443471, gi... - gi\|194443471\|ref\|YP_002040200.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica ser... gi\|167552996, gi... - gi\|205322466\|gb\|EDZ10305.1\| asparagine tRNA synthetase [Salmonella enterica subsp. enterica serovar ...	474.0	[0..107]	[567..15]
SYN_SHESM - Asparagine--tRNA ligase OS=Shewanella sp. (strain MR-4) GN=asnS PE=3 SV=1	474.0	[0..104]	[567..12]
SYN_YERPS - Asparagine--tRNA ligase OS=Yersinia pseudotuberculosis GN=asnS PE=3 SV=1 SYN_YERP3 - Asparagine--tRNA ligase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=asnS PE=3 ... SYN_YERPE - Asparagine--tRNA ligase OS=Yersinia pestis GN=asnS PE=3 SV=1 SYN_YERPA - Asparagine--tRNA ligase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=asnS PE=3 SV=1 SYN_YERPN - Asparagine--tRNA ligase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=asnS PE=3 SV=1 gi\|21959647, gi\|... - gi\|22126636\|ref\|NP_670059.1\| asparaginyl-tRNA synthetase [Yersinia pestis KIM], gi\|21959647\|gb\|AAM86... SYN_YERPS - Asparagine--tRNA ligase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=asnS PE=3 SV=1 gi\|45441008, gi\|... - gi\|45441008\|ref\|NP_992547.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001... gi\|149366669, gi... - gi\|149366669\|ref\|ZP_01888703.1\| asparaginyl-tRNA synthetase [Yersinia pestis CA88-4125], gi\|14929104... gi\|15979461, gi\|... - gi\|218928560\|ref\|YP_002346435.1\| asparaginyl-tRNA synthetase [Yersinia pestis CO92], gi\|16121692\|ref... SYN_YERPP - Asparagine--tRNA ligase OS=Yersinia pestis (strain Pestoides F) GN=asnS PE=3 SV=1 gi\|229841386, gi... - gi\|229841386\|ref\|ZP_04461545.1\| asparaginyl tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|229843491, gi... - gi\|229843491\|ref\|ZP_04463637.1\| asparaginyl tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|165938931, gi... - gi\|165938931\|ref\|ZP_02227484.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|162419705, gi... - gi\|77636026\|ref\|ZP_00798104.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia pestis Angol... gi\|165924584, gi... - gi\|165924584\|ref\|ZP_02220416.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|167050713, gi... - gi\|167400005\|ref\|ZP_02305523.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. UG0... gi\|166207346, gi... - gi\|166211575\|ref\|ZP_02237610.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Antiqua str. B42... gi\|167057132, gi... - gi\|167424283\|ref\|ZP_02316036.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str.... gi\|166962464, gi... - gi\|167419723\|ref\|ZP_02311476.1\| asparaginyl-tRNA synthetase [Yersinia pestis biovar Orientalis str. ... gi\|186697881, gi... - gi\|186894855\|ref\|YP_001871967.1\| asparaginyl-tRNA synthetase [Yersinia pseudotuberculosis PB1/+], gi... gi\|169751407, gi... - gi\|170024873\|ref\|YP_001721378.1\| asparaginyl-tRNA synthetase [Yersinia pseudotuberculosis YPIII], gi...	474.0	[0..106]	[567..14]
SYN_MANSM - Asparagine--tRNA ligase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=asnS PE=3 SV=1	473.0	[0..106]	[567..15]
gi\|238722626, gi... - gi\|77974872\|ref\|ZP_00830410.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia frederikseni...	472.0	[0..106]	[567..14]
gi\|77956525 - gi\|77956525\|ref\|ZP_00820617.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia bercovieri A... gi\|238795874, gi... - gi\|77963114\|ref\|ZP_00826927.1\| COG0017: Aspartyl/asparaginyl-tRNA synthetases [Yersinia mollaretii A...	472.0	[0..106]	[567..14]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATFLPATS LRLTQNSTLR FLSFFTISNP SYSLFRPLRR RVLPPFDAFP ANSRRRCFCT  60
   61 AVSESLGSGD GNKVESYEKR FGSKVGEFRK KL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [93-567]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RIAEVKGGAD EGLSRVGQSL NIMGWVRTLR SQSSVTFIEI NDGSCLSNLQ CVMTSDAEGY  60
   61 DQVESGSILT GASVSVQGTI VASQGTKQKV ELKVEKIIVV GECDSSYPIQ KKRVSREFLR 120
  121 TKAHLRPRTN TFGAVARVRN TLAYATHKFF QESGFVWVAS PIITASDCEG AGEQFCVTTL 180
  181 IPSSHENTDT SIDAIPKTKG GLIDWSQDFF GKPAFLTVSG QLNGETYATA LSDVYTFGPT 240
  241 FRAENSNTSR HLAEFWMIEP ELAFADLDDD MACATAYLQY VVKYVLDNCK EDMEFFDTWI 300
  301 EKGIIRRLSD VAEKEFLQLG YTDAIEILLK ANKKFDFPVK WGLDLQSEHE RYITEEAFGG 360
  361 RPVIIRDYPK EIKAFYMREN DDGKTVAAMD MLVPRIGELI GGSQREERLE VLEARLDELK 420
  421 LNKESYWWYL DLRRYGSVPH AGFGLGFERL VQFVTGIDNI RDVIPFPRTP ASAEF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	103.0
Match:	1x54A
Description:	No description for 1x54A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits