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View Structure Prediction Details

Protein: SPSA3_ARATH
Organism: Arabidopsis thaliana
Length: 1062 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for SPSA3_ARATH.

Predicted Domain #1
Region A:
Residues: [1-167]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGNEWINGY LEAILDSQAQ GIEETQQKPQ ASVNLREGDG QYFNPTKYFV EEVVTGVDET  60
   61 DLHRTWLKVV ATRNSRERNS RLENMCWRIW HLTRKKKQLE WEDSQRIANR RLEREQGRRD 120
  121 ATEDLSEDLS EGEKGDGLGE IVQPETPRRQ LQRNLSNLEI WSDDKKE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [168-679]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NRLYVVLISL HGLVRGENME LGSDSDTGGQ VKYVVELARA LARMPGVYRV DLFTRQICSS  60
   61 EVDWSYAEPT EMLTTAEDCD GDETGESSGA YIIRIPFGPR DKYLNKEILW PFVQEFVDGA 120
  121 LAHILNMSKV LGEQIGKGKP VWPYVIHGHY ADAGDSAALL SGALNVPMVL TGHSLGRNKL 180
  181 EQLLKQGRQS KEDINSTYKI KRRIEAEELS LDAAELVITS TRQEIDEQWG LYDGFDVKLE 240
  241 KVLRARARRG VNCHGRFMPR MAVIPPGMDF TNVEVQEDTP EGDGDLASLV GGTEGSSPKA 300
  301 VPTIWSEVMR FFTNPHKPMI LALSRPDPKK NITTLLKAFG ECRPLRELAN LTLIMGNRDD 360
  361 IDELSSGNAS VLTTVLKLID KYDLYGSVAY PKHHKQSDVP DIYRLAANTK GVFINPALVE 420
  421 PFGLTLIEAA AHGLPMVATK NGGPVDIHRA LHNGLLVDPH DQEAIANALL KLVSEKNLWH 480
  481 ECRINGWKNI HLFSWPEHCR TYLTRIAACR MR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 60.0
Match: 2r60A
Description: No description for 2r60A was found.

Predicted Domain #3
Region A:
Residues: [680-762]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPQWQTDADE VAAQDDEFSL NDSLKDVQDM SLRLSMDGDK PSLNGSLEPN SADPVKQIMS  60
   61 RMRTPEIKSK PELQGKKQSD NLG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [763-1062]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKYPVLRRRE RLVVLAVDCY DNEGAPDEKA MVPMIQNIIK AVRSDPQMAK NSGFAISTSM  60
   61 PLDELTRFLK SAKIQVSEFD TLICSSGSEV YYPGGEEGKL LPDPDYSSHI DYRWGMEGLK 120
  121 NTVWKLMNTT AVGGEARNKG SPSLIQEDQA SSNSHCVAYM IKDRSKVMRV DDLRQKLRLR 180
  181 GLRCHPMYCR NSTRMQIVPL LASRSQALRY LFVRWRLNVA NMYVVVGDRG DTDYEELISG 240
  241 THKTVIVKGL VTLGSDALLR STDLRDDIVP SESPFIGFLK VDSPVKEITD IFKQLSKATA 300
  301 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.69897
Match: 1s2oA
Description: X-Ray structure of the sucrose-phosphatase (SPP) from Synechocystis sp. PCC6803 at 1.40 A resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle