YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|8272456
Organism:	Physcomitrella patens
Length:	414 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|8272456.

Description	E-value	Query Range	Subject Range
gi\|114559348 - gi\|114559348\|ref\|XP_001170036.1\| PREDICTED: similar to PSMD4P2 protein isoform 1 [Pan troglodytes]	335.0	[0..10]	[402..523]
gi\|73981404 - gi\|73981404\|ref\|XP_850578.1\| PREDICTED: similar to phosphatidylinositol-4-phosphate 5-kinase, type I...	335.0	[0..10]	[402..534]
gi\|109016152 - gi\|109016152\|ref\|XP_001105461.1\| PREDICTED: phosphatidylinositol-4-phosphate 5-kinase, type I, alpha...	332.0	[0..10]	[402..531]
gi\|89267371, gi\|... - gi\|89267371\|emb\|CAJ82800.1\| proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 [Xenopus trop...	316.0	[0..1]	[401..1]
gi\|66524917 - gi\|66524917\|ref\|XP_393112.2\| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit 4 (2...	315.0	[0..1]	[400..1]
gi\|189529516, gi... - gi\|62955225\|ref\|NP_001017624.1\| proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 [Danio re...	315.0	[0..1]	[414..1]
gi\|3510374, gi\|1... - gi\|3510374\|dbj\|BAA32596.1\| antisecretory factor [Rattus norvegicus], gi\|149030721\|gb\|EDL85758.1\| pro...	314.0	[0..1]	[402..1]

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Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLEATMVCM DNSEWMRNGD YSPTRFQAQA DAINLICGAK TQSNPENTVG VLTMAGKGPR  60
   61 VLITPTNDLG KILQALHGLE VGGEMRMTSG VQVAQLALKH RQNKHQRQRI VLFAGSPVLA 120
  121 DKAVLEGMGK KLKKNNVALD IVSFGEDDGE KVEKLEALLN AVNNGDNSHI VHIPGGERVL 180
  181 SDVLIS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.69897
Match:	2b2xA
Description:	No description for 2b2xA was found.

Predicted Domain #2

Region A:
Residues: [187-414]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSIFTGDGEG GSGFAAAAAA SAAAAAVGGG GGAYDFGVDP NLDPELALAL RVSMEEERAR  60
   61 QEAAMKRSAE DSTAKGQQAG ESSSAPDVAM SDVGLVDTTD KSKDMMIDDD TALLQQAIAM 120
  121 SMAQAAQAAA AAGGGPATTD TSMEESGGDD QDLAYALQMS MQQAAAAASA AQGSADVNQV 180
  181 LGDQSFVSSV LSSLPGVDPN DPNVRDVLAS LQTDEGKNDD QATKDKSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.39794
Match:	1yx4A
Description:	Structure of S5a bound to monoubiquitin provides a model for polyubiquitin recognition
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits