YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16604485, gi\|...
Organism:	Arabidopsis thaliana
Length:	553 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16604485, gi|....

Description	E-value	Query Range	Subject Range
gi\|21554872 - gi\|21554872\|gb\|AAM63715.1\| unknown [Arabidopsis thaliana]	442.0	[0..1]	[553..1]
gi\|68355286 - gi\|68355286\|ref\|XP_685556.1\| PREDICTED: similar to hect domain and RLD 4 (predicted) [Danio rerio]	402.0	[0..1]	[528..100]
gi\|115369791, gi... - gi\|115373190\|ref\|ZP_01460491.1\| BNR repeat domain protein [Stigmatella aurantiaca DW4/3-1], gi\|11536...	385.0	[0..2]	[550..181]
gi\|108761023, gi... - gi\|108761023\|ref\|YP_629150.1\| RCC1 repeat-containing protein [Myxococcus xanthus DK 1622], gi\|108464...	383.0	[0..7]	[546..102]
gi\|50752803 - gi\|50752803\|ref\|XP_413753.1\| PREDICTED: similar to guanine nucleotide exchange factor p532 [Gallus g...	382.0	[0..30]	[550..367]
gi\|62422573 - gi\|62422573\|ref\|NP_003913.2\| guanine nucleotide exchange factor p532 [Homo sapiens]	381.0	[0..30]	[550..367]
gi\|114657536, gi... - gi\|114657536\|ref\|XP_510467.2\| PREDICTED: guanine nucleotide exchange factor p532 isoform 2 [Pan trog...	381.0	[0..30]	[550..367]
gi\|109484871 - gi\|109484871\|ref\|XP_001075834.1\| PREDICTED: similar to guanine nucleotide exchange factor p532 [Ratt...	379.0	[0..30]	[550..367]

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Predicted Domain #1

Region A:
Residues: [1-458]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDKSPTLLI SEDLSRKIIS LAAGEAHTIA LTGDGCVYSW GRGMFGRLGT GKESDELVPV  60
   61 LVEFPNQAEG DRIRIVGVAA GAYHSLAVSD DGSVWCWGYN IYGQLGFDGE NSLAPCLIKN 120
  121 LFERETSSSS LNDSGREVGS DLKVCTVKAG SMMSLAIDNV GGLWMWGNVP PQDSEPDPRL 180
  181 SFTSIPIPFP ILDFHGRTVL KVACGDEHVV ALVGPGDIHK DNSYDVSVLY SWGNNHHGQL 240
  241 GLGDGESRAR PQTVETFNQK SGLTVYDIAC GAHHTALLTY RKETPKGPSI CWTFGFGENG 300
  301 QLGHRSNKSS SLPEPVSDLP EHAYLVSVDC GLFHTSVVSS EGYVWSWGME RGLGLCPDVN 360
  361 FTEVEAGDDS VPRKISGGSS RFRDPVQVSC GAAHTVLVVD GGYKLWSWGR GRNGVLGTGN 420
  421 VSDCYVPTLV FWPNELKPEK EEVPDDGKSA STEEIKRL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.69897
Match:	1a12A
Description:	Regulator of chromosome condensation RCC1
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [459-553]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESKLMVMERY ASILHGSIFG KPFNEEEDIP YSLRVSGYFD MGKEWGEMLE SADKSQLMRL  60
   61 QAFYEDMIGR VKDKVLQRRI QEIMKDCLQS SAPKY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.900	a.29.16	Description not found.
View	Download	0.873	a.29.10	Description not found.
View	Download	0.862	a.7.16	Description not found.
View	Download	0.862	a.29.10	Description not found.
View	Download	0.862	a.8.3	Families 57/38 glycoside transferase middle domain
View	Download	0.799	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.734	a.11.1	Acyl-CoA binding protein
View	Download	0.730	a.11.1	Acyl-CoA binding protein
View	Download	0.713	a.118.1	ARM repeat

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits