| Protein: | UBC25_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 609 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBC25_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
431.0 | [0..1] | [604..1] |
|
|
381.0 | [0..81] | [609..2183] |
|
|
374.0 | [0..81] | [609..4406] |
|
|
371.0 | [0..81] | [609..2772] |
|
|
368.0 | [0..81] | [609..98] |
|
Region A: Residues: [1-251] |
1 11 21 31 41 51
| | | | | |
1 MEPNVVEIAT PPAASCSRIR TPTKAETPEV IDVEEYDLQN GGVPNGNNVD YKNKGKAIDF 60
61 DSMSYGDYGE EDEYAVGSPG DDYGYPESSP LSNSLLDPES LIYEDDENYS EQYDFEMEAE 120
121 PDNYSMYQDL FDGKDIPTGV EVSMDWFPNS ADKESASSSK SSHANNGNNS SKKATKASGI 180
181 HSQFSSDMET PVAQPWNALP HKAEGVIPNS AYALPQNSKA FQPPYAVHYS ALKTAFSNYL 240
241 QPQTPDTVLG E
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [252-327] |
1 11 21 31 41 51
| | | | | |
1 APAPAAGSSG LLPPNTPGFK SNAARFKEEP PILPPDDSRV KRNMEDYLGL YLFFKRFDIV 60
61 EDFSDHHYAS KGTTSK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.782 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.782 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.464 | a.2.7 | tRNA-binding arm |
| View | Download | 0.433 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.433 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.325 | c.47.1 | Thioredoxin-like |
| View | Download | 0.325 | c.47.1 | Thioredoxin-like |
| View | Download | 0.313 | c.47.1 | Thioredoxin-like |
| View | Download | 0.251 | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.230 | a.64.1 | Saposin |
|
Region A: Residues: [328-528] |
1 11 21 31 41 51
| | | | | |
1 QHSKDWAKRI QDEWRILEKD LPEMIFVRAY ESRMDLLRAV IIGAQGTPYH DGLFFFDIFF 60
61 PDTYPSTPPI VHYHSGGLRI NPNLYNCGKV CLSLLGTWSG NQREKWIPNT STMLQVLVSI 120
121 QGLILNQKPY FNEPGYERSA GSAHGESTSK AYSENTFILS LKTMVYTMRR PPKYFEDFAY 180
181 GHFFSCAHDV LKACNAYRNG A
|
| Detection Method: | |
| Confidence: | 31.69897 |
| Match: | 2pwqA |
| Description: | No description for 2pwqA was found. |
|
Region A: Residues: [529-609] |
1 11 21 31 41 51
| | | | | |
1 TPGYLVKGAP DVEENSAGMS SLKFRTDVAT FVETVLLKEF ILLGVLGLEP EEEEKTPETI 60
61 IVAESSKCTR SRSKRDRVSS S
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.412 | d.298.1 | Description not found. |
| View | Download | 0.377 | d.298.1 | Description not found. |
| View | Download | 0.282 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.279 | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.275 | a.74.1 | Cyclin-like |
| View | Download | 0.275 | a.74.1 | Cyclin-like |
| View | Download | 0.267 | a.39.1 | EF-hand |
| View | Download | 0.267 | a.39.1 | EF-hand |
| View | Download | 0.254 | a.64.2 | Bacteriocin AS-48 |
