YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|13605621, gi|...
Organism: Arabidopsis thaliana
Length: 245 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|13605621, gi|....

Description E-value Query
Range
Subject
Range
gi|46913808, gi|... - gi|54309372|ref|YP_130392.1| putative SAM-dependent methyltransferase [Photobacterium profundum SS9]...
270.0 [0..3] [245..1]

Back

Predicted Domain #1
Region A:
Residues: [1-245]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMLGVLQLP CRLHHSLFYS SSQIASSRPQ GVAKVVLKKG KTQLFKDGSP MVYSGAVDRI  60
   61 IGKPPPQTGD VVIVADGTEN PIGWGLYNSV SMFCVRLMQL QHESTRDPSC ALNIEKLLQT 120
  121 RIAEAVQLRK SLALPSANTN AYRLVNSEGD RLSGLIVDVF GDIAVVASSA AWLEKYRIEV 180
  181 ESCLRSIDGI NHINWRPSLD VLKEDGFDIS SLKQTQSSTL PQRSMVRCVV PLIRLWKMGS 240
  241 HTQFR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.69897
Match: 2as0A
Description: Crystal Structure of PH1915 (APC 5817): A Hypothetical RNA Methyltransferase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle