YRC Public Data Repository - Protein Structure Prediction

Protein:	CTF77_ARATH
Organism:	Arabidopsis thaliana
Length:	734 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CTF77_ARATH.

Description	E-value	Query Range	Subject Range
gi\|73670079, gi\|... - gi\|73670079\|ref\|YP_306094.1\| TPR repeat-containing protein [Methanosarcina barkeri str. Fusaro], gi\|...	342.0	[0..5]	[548..75]
gi\|118385554 - gi\|118385554\|ref\|XP_001025906.1\| TPR Domain containing protein [Tetrahymena thermophila] gi\|89307673, gi\|... - gi\|89307673\|gb\|EAS05661.1\| TPR Domain containing protein [Tetrahymena thermophila SB210], gi\|1183855...	337.0	[0..3]	[552..368]
gi\|113477431, gi... - gi\|71673743\|ref\|ZP_00671491.1\| TPR repeat:TPR-related region [Trichodesmium erythraeum IMS101], gi\|7...	335.0	[0..4]	[546..495]
gi\|33640682, gi\|... - gi\|33862569\|ref\|NP_894129.1\| TPR repeat-containing protein [Prochlorococcus marinus str. MIT 9313], ...	329.0	[0..3]	[541..533]
gi\|91079875 - gi\|91079875\|ref\|XP_967579.1\| PREDICTED: similar to CG10392-PB, isoform B [Tribolium castaneum]	327.0	[0..6]	[632..158]
gi\|66347873, gi\|... - gi\|66347873\|ref\|NP_001018115.1\| O-linked N-acetylglucosamine transferase isoform 2 [Danio rerio], gi...	325.0	[0..5]	[632..10]
gi\|66793439, gi\|... - gi\|66793439\|ref\|NP_001019747.1\| UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase [Xe...	324.0	[0..5]	[632..10]
gi\|110760723 - gi\|110760723\|ref\|XP_623820.2\| PREDICTED: similar to O-glycosyltransferase CG10392-PB, isoform B [Api...	323.0	[0..5]	[632..69]
gi\|115936542, gi... - gi\|115936542\|ref\|XP_001177116.1\| PREDICTED: similar to UDP-N-acetylglucosaminyltransferase [Strongyl...	322.0	[0..9]	[632..14]

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Predicted Domain #1

Region A:
Residues: [1-497]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADKYIVEEA EALAKRALHS PIAQATPIYE QLLSLYPTSA RFWKQYVEAQ MAVNNDDATK  60
   61 QIFSRCLLTC LQVPLWQCYI RFIRKVYDKK GAEGQEETTK AFEFMLNYIG TDIASGPIWT 120
  121 EYIAFLKSLP ALNLNEDLHR KTALRKVYHR AILTPTHHVE QLWKDYENFE NTVNRQLAKG 180
  181 LVNEYQPKFN SARAVYRERK KYIEEIDWNM LAVPPTGTSK EETQWVAWKK FLSFEKGNPQ 240
  241 RIDTASSTKR IIYAYEQCLM CLYHYPDVWY DYAEWHVKSG STDAAIKVFQ RALKAIPDSE 300
  301 MLKYAFAEME ESRGAIQSAK KLYENILGAS TNSLAHIQYL RFLRRAEGVE AARKYFLDAR 360
  361 KSPSCTYHVY IAFATMAFCI DKEPKVAHNI FEEGLKLYMS EPVYILKYAD FLTRLNDDRN 420
  421 IRALFERALS TLPVEDSAEV WKRFIQFEQT YGDLASILKV EQRMKEALSG KGEEGSSPPE 480
  481 SSLQDVVSRY SYMDLWP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.522879
Match:	2ooeA
Description:	No description for 2ooeA was found.

Predicted Domain #2

Region A:
Residues: [498-593]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CTSNDLDHLA RQELLVKNLN KKAGKTNLPH VPAAIGSVAS SSKVVYPDTS QMVVQDPTKK  60
   61 SEFASSANPV AASASNTFPS TVTATATHGS ASTFDE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.560	a.118.8	TPR-like
View	Download	0.445	d.58.7	RNA-binding domain, RBD
View	Download	0.440	d.58.7	RNA-binding domain, RBD
View	Download	0.437	d.18.1	ssDNA-binding transcriptional regulator domain
View	Download	0.420	a.135.1	Tetraspanin
View	Download	0.420	a.135.1	Tetraspanin
View	Download	0.389	a.74.1	Cyclin-like
View	Download	0.367	a.60.9	lambda integrase-like, N-terminal domain
View	Download	0.358	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain
View	Download	0.335	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac

Predicted Domain #3

Region A:
Residues: [594-734]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPKTTPPALV AFLANLPIVD GPTPNVDVVL SICLQSDFPT GQTVKQSFAA KGNPPSQNDP  60
   61 SGPTRGVSQR LPRDRRATKR KDSDRQEEDD TATVQSQPLP TDVFRLRQMR KARGIATSSQ 120
  121 TPTGSTSYGS AFSGELSGST G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.0
Match:	1y0fA
Description:	No description for 1y0fA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits