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View Structure Prediction Details

Protein: ACR4_ARATH
Organism: Arabidopsis thaliana
Length: 451 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ACR4_ARATH.

Description E-value Query
Range
Subject
Range
gi|42572033 - gi|42572033|ref|NP_974107.1| ACR4 (ACT REPEAT 4); amino acid binding [Arabidopsis thaliana]
414.0 [0..1] [451..5]
gi|115453517, gi... - gi|50916533|ref|XP_468663.1| putative ACT domain containing protein, ACR4, with alternative splicing...
360.0 [0..4] [449..9]
gi|92890833 - gi|92890833|gb|ABE90521.1| ACT domain, putative [Medicago truncatula]
359.0 [0..7] [451..1]

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Predicted Domain #1
Region A:
Residues: [1-171]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFSQDMDNE YEKLIRRMNP PRVVIDNDSC KKATVIRVDS ANEYGILLEV VQILTDLNLT  60
   61 ITKAYISSDG GWFMDVFNVT DQDGNKVTDE VVLDYIQKSL GPEACFSTSM RSVGVIPSTD 120
  121 STVIELTGCD RPGLLSELSA VLTHLKCSVL NAEIWTHNTR AAAVMQVTDD L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.0
Match: 2nyiA
Description: No description for 2nyiA was found.

Predicted Domain #2
Region A:
Residues: [172-255]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGCGISDPER LSRIKNLLRN VLKGSNTPRE AKTVVSHGEV HTDRRLHQMM FEDRDYEHRL  60
   61 VDDDSSIQDE RQRPDVCVDN WLDK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [256-451]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYSVVTVRCK DRPKLLFDTV CTLTDMQYVV FHGSVDTEGT EAFQEYYVRH IDGSPVKSEA  60
   61 EKQRVIQCLE AAIKRRVSEG LKLELCTTDR VGLLSNVTRI FRENSLTVTR AEVKTKGGKA 120
  121 LNTFYVSDAS GYSIDAKTID SIRQTIGQTI LKVKNNPQEQ QQRQKSPSHE SPTRFLFGGL 180
  181 FKSKSFVNFG LVRSYS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.045757
Match: 1u8sA
Description: Crystal structure of putative glycine cleavage system transcriptional repressor
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle