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View Structure Prediction Details

Protein: gi|14423484, gi|...
Organism: Arabidopsis thaliana
Length: 247 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|14423484, gi|....

Description E-value Query
Range
Subject
Range
gi|21536670 - gi|21536670|gb|AAM61002.1| unknown [Arabidopsis thaliana]
388.0 [0..1] [247..1]

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Predicted Domain #1
Region A:
Residues: [1-85]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVILSASSTV RAALDTQPRL PYNPNAPRKV KKIPNGNSFL PPPSPAPSPG ISISVADLLK  60
   61 RPSSKEITVD VDDTYMGYET WSPSP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.410 a.77.1 DEATH domain
View Download 0.232 a.64.1 Saposin

Predicted Domain #2
Region A:
Residues: [86-247]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKLEKPRSVF NPASLAFIGD SIYELYARRH FLFPPLSIED YNDRVRAVVR CEAQYALLNK  60
   61 LVDDDFLTKE ERDILRWGKN LGSARTRTRR RAGNAVYNKA SSLETLIGYL YLTNGKRLEK 120
  121 IMEKLGFSSD SSTEIVIEET NPKPSESSNL PNFILNEQVV SF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 46.0
Match: 1u61A
Description: X-ray crystal structure of conserved hypothetical protein from Bacillus cereus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.586992806283081 bayes_pls_golite062009
hydrolase activity 0.16401529741579 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.00837845982391983 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle