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View Structure Prediction Details

Protein: BASS2_ORYSJ
Organism: Oryza sativa Japonica Group
Length: 419 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BASS2_ORYSJ.

Description E-value Query
Range
Subject
Range
gi|51457946 - gi|51457946|gb|AAU03362.1| putative anion:sodium symporter [Lycopersicon esculentum]
198.0 [0..68] [419..60]

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Predicted Domain #1
Region A:
Residues: [1-107]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASTTCPAR SMASVSRALR PRPHAAIASA AVRTAARLGG GLGIVCSMPS YGRKEKEEWG  60
   61 LTIASAPATT AAPALRSCQL LCKAEANISS NLPESIPSEA NQYEKIV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [108-331]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELLTTLFPVW VILGTIIGIY KPSMVTWLET DLFTVGLGFL MLSMGLTLTF EDFRRCMRNP  60
   61 WTVGVGFLAQ YLIKPMLGFA IAMTLKLSAP LATGLILVSC CPGGQASNVA TYISKGNVAL 120
  121 SVLMTTCSTI GAIVMTPLLT KLLAGQLVPV DAAGLAISTF QVVLLPTIVG VLAHEYFPKF 180
  181 TERIISITPL IGVLLTTLLC ASPIGQVSEV LKAQGGQLII PVAL

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 70.39794
Match: PF01758.7
Description: No description for PF01758.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [332-419]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LHVAAFALGY WLSKVSSFGE STSRTISIEC GMQSSALGFL LAQKHFTNPL VAVPSAVSVV  60
   61 CMALGGSALA VFWRNRGLPA NDKDDFKE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle