YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|8071622
Organism:	Vitis cinerea var. helleri x Vitis rupestris
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|8071622.

Description	E-value	Query Range	Subject Range
gi\|111379070 - gi\|111379070\|gb\|ABH09322.1\| putative aquaporin [Vitis vinifera]	285.0	[0..1]	[286..1]
gi\|116311126, gi... - gi\|125549323\|gb\|EAY95145.1\| hypothetical protein OsI_16963 [Oryza sativa Indica Group], gi\|116311126... PIP12_ORYSJ - Probable aquaporin PIP1-2 OS=Oryza sativa subsp. japonica GN=PIP1-2 PE=2 SV=3	283.0	[0..1]	[286..1]
gi\|113565112, gi... - gi\|115459882\|ref\|NP_001053541.1\| Os04g0559700 [Oryza sativa (japonica cultivar-group)], gi\|113565112...	283.0	[0..1]	[286..1]
PIP14_ARATH - Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1	281.0	[0..1]	[286..1]
gi\|50345961 - gi\|50345961\|gb\|AAT74898.1\| plasma membrane intrinsic protein PIP1-1 [Fraxinus excelsior]	280.0	[0..1]	[286..1]
gi\|77992951 - gi\|77992951\|gb\|ABB13429.1\| plasma membrane intrinsic protein [Olea europaea]	280.0	[0..1]	[284..1]
PIP12_MAIZE - Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1	279.0	[0..1]	[286..1]

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Predicted Domain #1

Region A:
Residues: [1-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGKEEDVRV GANKFSERQP IGTAAQGDDK DYKEPPPAPL FEPGELCSWS FYRAGIAEFI  60
   61 ATFLFLYVSV LTVMGVVRAD SKCSTVGIQG IAWAFGGMIF ALVYCTAGIS GGHINPAVTF 120
  121 GLFLARKLSL TRAVYYMVMQ CLGAICGAGV VKGFEKGRYN SLGGGANVVN AGYTKGDGLG 180
  181 AEIVGTFVLV YTVFSATDAK RNARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS 240
  241 LGAAIIYNKD HAWDDHWIFW VGPFIGAALA ALYHQVVIRA IPFKSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.522879
Match:	2b5fA
Description:	Crystal structure of the spinach aquaporin SoPIP2;1 in an open conformation to 3.9 resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits