YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|158283373, gi...
Organism:	Chlamydomonas reinhardtii
Length:	438 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|158283373, gi....

Description	E-value	Query Range	Subject Range
ETF1 - eukaryotic translation termination factor 1 ERF1_MOUSE - Eukaryotic peptide chain release factor subunit 1 OS=Mus musculus GN=Etf1 PE=1 SV=4 ERF1_MESAU - Eukaryotic peptide chain release factor subunit 1 OS=Mesocricetus auratus GN=ETF1 PE=1 SV=3 gi\|118097222 - gi\|118097222\|ref\|XP_414511.2\| PREDICTED: similar to C11 protein [Gallus gallus] ERF1_RABIT - Eukaryotic peptide chain release factor subunit 1 OS=Oryctolagus cuniculus GN=ETF1 PE=1 SV=3 gi\|114601971, gi... - gi\|114601971\|ref\|XP_001171542.1\| PREDICTED: eukaryotic translation termination factor 1 isoform 3 [P... gi\|126290367 - gi\|126290367\|ref\|XP_001368222.1\| PREDICTED: similar to C11 protein [Monodelphis domestica] tr\|M3WU44\|M3WU44... - Uncharacterized protein OS=Felis catus GN=ETF1 PE=4 SV=1 ERF1_RAT - Eukaryotic peptide chain release factor subunit 1 OS=Rattus norvegicus GN=Etf1 PE=2 SV=3 gi\|73970878, gi\|... - gi\|73978635\|ref\|XP_531922.2\| PREDICTED: similar to eukaryotic translation termination factor 1 (pred... ENSCJAT00000013296 - null gi\|109078786 - gi\|109078786\|ref\|XP_001113021.1\| PREDICTED: similar to eukaryotic translation termination factor 1 (... ERF1_BOVIN - Eukaryotic peptide chain release factor subunit 1 OS=Bos taurus GN=ETF1 PE=2 SV=3	590.0	[0..3]	[438..4]
gi\|74142070 - gi\|74142070\|dbj\|BAE41096.1\| unnamed protein product [Mus musculus]	590.0	[0..3]	[438..4]
ERF1_PONPY - Eukaryotic peptide chain release factor subunit 1 - Pongo pygmaeus (Orangutan) ERF1_PONAB - Eukaryotic peptide chain release factor subunit 1 OS=Pongo abelii GN=ETF1 PE=2 SV=3	589.0	[0..3]	[438..4]
ERF1_XENTR - Eukaryotic peptide chain release factor subunit 1 OS=Xenopus tropicalis GN=etf1 PE=2 SV=1	588.0	[0..3]	[438..4]
ERF1_XENLA - Eukaryotic peptide chain release factor subunit 1 OS=Xenopus laevis GN=etf1 PE=2 SV=1	584.0	[0..3]	[438..4]
gi\|91076450 - gi\|91076450\|ref\|XP_971668.1\| PREDICTED: similar to eukaryotic release factor 1 CG5605-PA [Tribolium ...	584.0	[0..2]	[426..3]

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Predicted Domain #1

Region A:
Residues: [1-438]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADQSETDKN IEMWKIKRLI KALEAARGNG TSMISLIMPP KDQVARVQKM LGDEYGTASN  60
   61 IKSRVNRLSV LSAITSAQQR LKLYNKVPPN GLVVYTGTIM TDDGKEKKVN IDFEPFKPIN 120
  121 TSLYLCDNKF HTEALNELLE SDNKYGFIIM DGNGSLFGTL CGNTREVLHK FTVDLPKKHG 180
  181 RGGQSALRFA RLRVEKRHNY VRKVAEMAVQ FFITNDRPNV SGLVLAGSAD FKTELSQSDI 240
  241 FDPRLQAVVL GVVDVSYGGE NGFNQAIELS AEMLANVKFV QEKRLIGRFF EEISQDSGKF 300
  301 VFSVKDTMQC LEMGAVEILI VWENLDCDRY ELMNPSTQKV EVKLLNAEQA KDLSHFKDKE 360
  361 AGCDLEVQDK MPLLEWLANN YKKFGCTLEF VTNKSQEGSQ FCRGFGGIGG ILRYQVNLAE 420
  421 LDVDEDDAGD ALWSDDDF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	169.0
Match:	1dt9A
Description:	Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1; C-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1; N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits