| Protein: | MAD16_ORYSJ |
| Organism: | Oryza sativa Japonica Group |
| Length: | 224 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MAD16_ORYSJ.
| Description | E-value | Query Range |
Subject Range |
|
|
249.0 | [0..1] | [224..1] |
|
|
246.0 | [0..1] | [224..1] |
|
|
241.0 | [0..1] | [218..1] |
|
|
240.0 | [0..1] | [220..1] |
|
|
239.0 | [0..1] | [224..1] |
|
|
239.0 | [0..1] | [224..1] |
|
|
237.0 | [0..1] | [218..1] |
|
Region A: Residues: [1-77] |
1 11 21 31 41 51
| | | | | |
1 MGRGKIEIKR IENATNRQVT YSKRRTGIMK KARELTVLCD AQVAIIMFSS TGKYHEFCSP 60
61 STDIKGIFDR YQQAIGT
|
| Detection Method: |  |
| Confidence: | 20.69897 |
| Match: | 1tqeP |
| Description: | Mechanism of recruitment of class II histone deacetylases by myocyte enhancer factor-2 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [78-224] |
1 11 21 31 41 51
| | | | | |
1 SLWIEQYENM QRTLSHLKDI NRNLRTEIRQ RMGEDLDGLE FDELRGLEQN VDAALKEVRH 60
61 RKYHVITTQT ETYKKKVKHS YEAYETLQQE LGLREEPAFG FVDNTGGGWD GGAGAGAAAD 120
121 MFAFRVVPSQ PNLHGMAYGG NHDLRLG
|
| Detection Method: | |
| Confidence: | 17.721246 |
| Match: | PF01486.8 |
| Description: | No description for PF01486.8 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.665 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.665 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.663 | N/A | N/A | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.663 | N/A | N/A | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.645 | N/A | N/A | f.34.1 | Mechanosensitive channel protein MscS (YggB), transmembrane region |
| View | Download | 0.540 | N/A | N/A | f.18.1 | F1F0 ATP synthase subunit A |
| View | Download | 0.540 | N/A | N/A | f.18.1 | F1F0 ATP synthase subunit A |
| View | Download | 0.530 | N/A | N/A | a.19.1 | Fertilization protein |
| View | Download | 0.530 | N/A | N/A | a.19.1 | Fertilization protein |
| View | Download | 0.488 | N/A | N/A | a.19.1 | Fertilization protein |
