YRC Public Data Repository - Protein Structure Prediction

Protein:	HEM2_ORYSJ
Organism:	Oryza sativa Japonica Group
Length:	426 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HEM2_ORYSJ.

Description	E-value	Query Range	Subject Range
gi\|1041423 - gi\|1041423\|emb\|CAA63139.1\| aminolevulinate dehydratase [Hordeum vulgare subsp. vulgare] HEM2_HORVU - Delta-aminolevulinic acid dehydratase, chloroplastic OS=Hordeum vulgare GN=HEMB PE=2 SV=1	622.0	[0..1]	[422..1]
gi\|27380148, gi\|... - gi\|27380148\|ref\|NP_771677.1\| delta-aminolevulinic acid dehydratase [Bradyrhizobium japonicum USDA 11...	596.0	[0..1]	[423..160]
gi\|13560098 - gi\|13560098\|emb\|CAC36148.1\| ALA dehydratase [Fucus vesiculosus]	588.0	[0..4]	[423..3]
gi\|13560254 - gi\|13560254\|emb\|CAC36186.1\| ALA dehydratase [Odontella sinensis]	583.0	[0..14]	[423..1]
HEM21_ARATH - Delta-aminolevulinic acid dehydratase 1, chloroplastic OS=Arabidopsis thaliana GN=HEMB1 PE=2 SV=1	580.0	[0..1]	[424..1]
HEM2_SELMA - Delta-aminolevulinic acid dehydratase, chloroplastic OS=Selaginella martensii GN=HEMB PE=3 SV=1	580.0	[0..9]	[424..6]
HEM2_SPIOL - Delta-aminolevulinic acid dehydratase, chloroplastic OS=Spinacia oleracea GN=HEMB PE=1 SV=2	576.0	[0..1]	[424..1]
gi\|13183730 - gi\|13183730\|gb\|AAK15323.1\|AF332195_1 aminolevulinate dehydratase [Raphanus sativus]	572.0	[0..1]	[424..1]
gi\|119944101, gi... - gi\|119944101\|ref\|YP_941781.1\| delta-aminolevulinic acid dehydratase [Psychromonas ingrahamii 37], gi...	571.0	[0..93]	[424..2]
gi\|119768843, gi... - gi\|68546484\|ref\|ZP_00586031.1\| Porphobilinogen synthase [Shewanella amazonensis SB2B], gi\|68515898\|g...	567.0	[0..91]	[424..1]

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Predicted Domain #1

Region A:
Residues: [1-96]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTVSFSPA NVQMLQGRSC HGHAAFGGCS AVPRTGPRMR SVAVRVSSEQ EAAPAVRAPS  60
   61 GRTIEECEAD AVAGRFPAPP PLVRPKAPEG TPQIRP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.268	a.81.1	N-terminal domain of DnaB helicase
View	Download	0.268	a.81.1	N-terminal domain of DnaB helicase
View	Download	0.213	a.77.1	DEATH domain
View	Download	0.213	a.77.1	DEATH domain
View	Download	0.212	d.58.7	RNA-binding domain, RBD

Predicted Domain #2

Region A:
Residues: [97-426]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDLTKRPRRN RRSPALRAAF QETTISPANL VLPLFIHEGE DDAPIGAMPG CYRLGWRHGL  60
   61 LDEVYKSRDV GVNSFVLFPK VPDALKSQSG DEAYNDNGLV PRTIRLLKDK FPDIVVYTDV 120
  121 ALDPYSSDGH DGIVREDGVI MNDETVYQLC KQAVSQARAG ADVVSPSDMM DGRVGAIRAA 180
  181 LDAEGFHDVS IMSYTAKYAS SFYGPFREAL DSNPRFGDKK TYQMNPANYR EALLETAADE 240
  241 AEGADILLVK PGLPYLDVIR LLRDNSALPI AAYQVSGEYS MIKAGGALNM IDEEKVMMES 300
  301 LMCLRRAGAD IILTYFARQA ANVLCGMRSN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	149.0
Match:	1w1zA
Description:	Structure of the plant like 5-Aminolaevulinic Acid Dehydratase from Chlorobium vibrioforme
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits