| Protein: | SPL12_ORYSJ |
| Organism: | Oryza sativa Japonica Group |
| Length: | 475 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPL12_ORYSJ.
| Description | E-value | Query Range |
Subject Range |
|
|
397.0 | [0..6] | [468..1] |
|
|
340.0 | [0..6] | [365..1] |
|
|
302.0 | [0..132] | [475..61] |
|
Region A: Residues: [1-143] |
1 11 21 31 41 51
| | | | | |
1 MASFGMNWNQ KSPVFWDWEN PAPFGPNTME NPKSIPHPEP RGVVVAAANH GSTNSSGGTF 60
61 TSSSELANGS SKSSLSASFD SSSKLGNSLE FRFASVKGHG KNMCKDGEAG RVEDSGTSPA 120
121 VAVSHGEPVI GLKLGKRTYF ENV
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [144-276] |
1 11 21 31 41 51
| | | | | |
1 CGGQNVKSSS AASGVTCPST VVKKMKVSQQ STQSSYCQVE GCKVDLSSAR EYHRKHKVCE 60
61 AHSKAPKVIV SGLERRFCQQ CSRFHGLAEF DQKKKSCRRR LSDHNARRRK PQQEAISFGS 120
121 SRLATMFYDA RQQ
|
| Detection Method: | |
| Confidence: | 39.045757 |
| Match: | 1ul4A |
| Description: | Solution structure of the DNA-binding domain of squamosa promoter binding protein-like 4 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [277-475] |
1 11 21 31 41 51
| | | | | |
1 TDIYFGQSPF GQVRSNAISS CDNLGGFKFT EAKLPWMKPM KTIGLEDLNF STLQMPGNVV 60
61 SHTVHHHDFD GLIPFKGNTP KVLNQGVDPA CAVVSSNSNG APDLRRALSL LSSDSWGPAD 120
121 VQAGSQVHPG GVMPPLAVAA ATVTAPTNPV SVMHALHPST GGGGFWQDGD DPPPLDHASQ 180
181 AQAFMHPGNG SSSGYGHLH
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
