YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|115478362, gi...
Organism: Oryza sativa Japonica Group
Length: 302 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|115478362, gi....

Description E-value Query
Range
Subject
Range
gi|21554173 - gi|21554173|gb|AAM63252.1| chaperone GrpE-like protein [Arabidopsis thaliana]
212.0 [0..2] [295..1]

Back

Predicted Domain #1
Region A:
Residues: [1-302]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAASRLLAR ASRQCVAAVA ASAARRRRCP AAALSLPVVT AAKAAAAEPW LGVPYMLNQP  60
   61 LRYSTTIFQR FGFSSTSPEL SDKEENQRKD QENSTNVSNE GTEDVDLSKE DLVQLVLEKD 120
  121 GLLKSKDEEI NDMKDKVLRS YAEMENVIAR TKRESENSKK YAVQNFSKSL LDVADNLTRA 180
  181 SSVVKESFSK IDTSKDSTGA VPLLKTLLEG VDMTDKQLGE VFKKFGVEKF DPLNEKFDPS 240
  241 RHCAIFQIPD PSKPSGTVAS VVKVGYMLHD RVLRPAEVGV TEGGPTTTEE AAENSEQKSS 300
  301 EV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.0
Match: 1dkgA
Description: Head domain of nucleotide exchange factor GrpE; Coiled-coil domain of nucleotide exchange factor GrpE
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle