YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|125606472, gi...
Organism:	Oryza sativa Japonica Group
Length:	414 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125606472, gi....

Description	E-value	Query Range	Subject Range
gi\|60547717, gi\|... - gi\|60547717\|gb\|AAX23822.1\| hypothetical protein At2g20980 [Arabidopsis thaliana], gi\|52354259\|gb\|AAU...	413.0	[0..24]	[407..18]
MCM10_XENTR - Protein MCM10 homolog OS=Xenopus tropicalis GN=mcm10 PE=2 SV=1	312.0	[0..9]	[285..141]
gi\|171407 - gi\|171407\|gb\|AAA34574.1\| DNA43 [Saccharomyces cerevisiae]	301.0	[0..92]	[414..158]
gi\|109088223 - gi\|109088223\|ref\|XP_001085751.1\| PREDICTED: similar to minichromosome maintenance protein 10 isoform...	299.0	[0..9]	[283..176]
gi\|58701913 - gi\|58701913\|gb\|AAH90220.1\| LOC398196 protein [Xenopus laevis]	297.0	[0..9]	[328..141]
gi\|57040512 - gi\|57040512\|ref\|XP_544256.1\| PREDICTED: similar to minichromosome maintenance protein 10 isoform 2 [...	296.0	[0..9]	[283..176]
gi\|76670409 - gi\|76670409\|ref\|XP_605989.2\| PREDICTED: minichromosome maintenance complex component 10 [Bos taurus]	295.0	[0..9]	[283..173]
gi\|50770552 - gi\|50770552\|ref\|XP_427082.1\| PREDICTED: similar to minichromosome maintenance protein 10 isoform 2; ...	292.0	[0..17]	[281..236]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATAAAADDL DLLLSLDADG GEAVLETPPS SPRRDAATAA AFTPPRAVRP GGTDMSVFRD  60
   61 AVKDYLDATP AAVATSLPKG KRPPKSTETI VDAHSGLRIR SLTASPLEIT NRFADIRFVR 120
  121 ISAIRNLAGG DSFSGCWATA GVVLDKGAPR VS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [153-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQGKEYSIWK MGALDDADVS VFLFGDAHAH HSGAAVGAVF ALFNGNVRMD NGGRGFSVSV  60
   61 ASVGQMMKMG VSADFGICKG KRKDGMGCTM AINKRKGSYC KFHSSKSSQK YSTGRVELKG 120
  121 GNFKFASKLR SEGIYM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [289-414]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNPLERSNSR NPLQPVKVMS IDGLKRALSN ADRVTAKSQS QGIRFLSHVT GNIESNLSSN  60
   61 GSTNPQTSRF SSNKRSTSCS TKSMPKPGLQ KQEQDNKKMK MTCPPKKTIE LDDVSSDDEI 120
  121 SIVLRR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits