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View Structure Prediction Details

Protein: TPPE_ARATH
Organism: Arabidopsis thaliana
Length: 354 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TPPE_ARATH.

Description E-value Query
Range
Subject
Range
TPPD_ARATH - Probable trehalose-phosphate phosphatase D OS=Arabidopsis thaliana GN=TPPD PE=2 SV=1
251.0 [0..3] [351..6]
gi|60265773, gi|... - gi|60265773|gb|AAX16015.1| trehalose-6-phosphate synthase [Ginkgo biloba], gi|60265771|gb|AAX16014.1...
246.0 [0..11] [353..489]
gi|55792824 - gi|55792824|gb|AAV65495.1| trehalose 6-phosphate synthase [Gossypium hirsutum]
245.0 [0..11] [347..489]

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Predicted Domain #1
Region A:
Residues: [1-84]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRFIEENIT KMLETKAISN SEVLYVGGDD GDTSPTTKVL HDFQINSGGG LIRSWVDSMR  60
   61 ACSPTRPKSF NSQSCWIKEH PSAL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.0
Match: 1uqtA
Description: Trehalose-6-phosphate from E. coli bound with UDP-2-fluoro glucose.
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [85-354]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NMFEEILHKS EGKQIVMFLD YDGTLSPIVD DPDRAFMSKK MRNTVRKLAK CFPTAIVSGR  60
   61 CREKVSSFVK LTELYYAGSH GMDIKGPEQG SKYKKENQSL LCQPATEFLP VINEVYKKLV 120
  121 ENTQSIPGAK VENNKFCASV HFRCVEENKW SDLAHQVRSV LKNYPKLMLT QGRKVLEIRP 180
  181 IIKWDKGKAL EFLLESLGYD NCTDVFPIYI GDDRTDEDAF KILRDKKQGL GILVSKYAKE 240
  241 TNASYSLQEP DEVMVFLERL VEWKQSRCGA 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.0
Match: 2pq0A
Description: No description for 2pq0A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle