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View Structure Prediction Details

Protein: TPPD_ARATH
Organism: Arabidopsis thaliana
Length: 369 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TPPD_ARATH.

Description E-value Query
Range
Subject
Range
gi|21554408 - gi|21554408|gb|AAM63513.1| trehalose-phosphatase, putative [Arabidopsis thaliana]
247.0 [0..1] [369..1]

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Predicted Domain #1
Region A:
Residues: [1-93]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNHNALISD AKGSIGVAVR VPNQSLFSPG GGRYISIPRK KLVQKLEADP SQTRIHTWIE  60
   61 AMRASSPTRT RPGNISPLPE SDEEDEYSSW MAQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.221849
Match: 1uqtA
Description: Trehalose-6-phosphate from E. coli bound with UDP-2-fluoro glucose.
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [94-369]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPSALTMFEE IAEASKGKQI VMFLDYDGTL SPIVENPDRA YMSEEMREAV KGVARYFPTA  60
   61 IVTGRCRDKV RRFVKLPGLY YAGSHGMDIK GPSKRNKHNK NNKGVLFQAA NEFLPMIDKV 120
  121 SKCLVEKMRD IEGANVENNK FCVSVHYRCV DQKDWGLVAE HVTSILSEYP KLRLTQGRKV 180
  181 LEIRPTIKWD KGKALEFLLE SLGFANSNDV LPIYIGDDRT DEDAFKVLRN KGQGFGILVS 240
  241 KIPKETSATY SLQEPSEVGE FLQRLVEWKQ MSLRGR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 31.221849
Match: 1rkqA
Description: Crystal structure of NYSGRC target T1436: A Hypothetical protein yidA.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.92340854382984 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle