YRC Public Data Repository - Protein Structure Prediction

Protein:	FB252_ARATH
Organism:	Arabidopsis thaliana
Length:	502 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FB252_ARATH.

Description	E-value	Query Range	Subject Range
gi\|46518445, gi\|... - gi\|46518445\|gb\|AAS99704.1\| At5g06550 [Arabidopsis thaliana], gi\|10178111\|dbj\|BAB11404.1\| unnamed pro...	209.0	[0..1]	[425..1]
gi\|85090445 - gi\|85090445\|ref\|XP_958420.1\| hypothetical protein NCU07419 [Neurospora crassa OR74A] gi\|32414451, gi\|... - gi\|32414451\|ref\|XP_327705.1\| hypothetical protein [Neurospora crassa], gi\|28919781\|gb\|EAA29184.1\| co...	182.0	[0..35]	[497..22]
gi\|38104013, gi\|... - gi\|39944838\|ref\|XP_361956.1\| hypothetical protein MG04401.4 [Magnaporthe grisea 70-15], gb\|EAA50642....	175.0	[0..15]	[494..3]
gi\|113645350, gi... - gi\|77551600\|gb\|ABA94397.1\| transcription factor jumonji, putative, expressed [Oryza sativa (japonica...	172.0	[0..39]	[502..57]
gi\|115384942, gi... - gi\|115384942\|ref\|XP_001209018.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	167.0	[0..21]	[502..5]
orf19.551 - orf19.551 CGDID:CAL0000230 Assembly 19, Contig19-10053 (144193, 145851) CDS, translated using codon ... gi\|46439123, gi\|... - gi\|68477242\|ref\|XP_717414.1\| hypothetical protein CaO19.551 [Candida albicans SC5314], gi\|46439123\|g...	163.0	[0..33]	[489..2]
gi\|116180672, gi... - gi\|88185261\|gb\|EAQ92729.1\| hypothetical protein CHGG_00964 [Chaetomium globosum CBS 148.51], gi\|1161...	163.0	[0..8]	[482..1]
gi\|114688773 - gi\|114688773\|ref\|XP_521077.2\| PREDICTED: PHD finger protein 8 [Pan troglodytes]	159.0	[0..3]	[486..10]
gi\|42553519, gi\|... - gi\|46124925\|ref\|XP_387016.1\| hypothetical protein FG06840.1 [Gibberella zeae PH-1], gi\|42553519\|gb\|E...	157.0	[0..39]	[497..19]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKCKNLLLT SKRRKSKSKR LKLHQHEPES LFPEKEVEEE DEDEGGFKLK IAAPSQEHGV  60
   61 QPLGNLYFNP GAVNVRNTGL GNLQILSDEL VLDILGLLGA NHLGVLATVT KSFYIFANHE 120
  121 PLWRNLVLEE LKGDFLFNGS WRSTYVAAYH PKFKFAGDGE SNLKIIDFYS DYLFQSWLCA 180
  181 NLEMK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.09691
Match:	2ovpB
Description:	No description for 2ovpB was found.

Predicted Domain #2

Region A:
Residues: [186-502]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKWLRRDNIT RVRGISVEDF ITKFEEPNKP VLLEGCLDGW PAIEKWSRDY LTKVVGDVEF  60
   61 AVGPVEMKLE KYFRYSDGAR EERPLYLFDP KFAEKVPVLD SEYDVPVYFR EDLFGVLGNE 120
  121 RPDYRWIIIG PAGSGSSFHI DPNSTSAWNA VITGSKKWVL FPPDVVPPGV HPSPDGAEVA 180
  181 CPVSIIEWFM NFYDDTKDWE KKPIECICKA GEVMFVPNGW WHLVINLEES IAITQNYASR 240
  241 SNLLNVLEFL KKPNAKELVS GTTDRENLHD KFKKAIEEAY PGTIQELEKK AEEAKRAEEQ 300
  301 RVSFWDSAKT DTFKFSF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.0
Match:	2yu1A
Description:	No description for 2yu1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits