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View Structure Prediction Details

Protein: CKX5_ARATH
Organism: Arabidopsis thaliana
Length: 540 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CKX5_ARATH.

Description E-value Query
Range
Subject
Range
glcD - glcD glycolate oxidase subunit GlcD 1233699:1235192 forward MW:53314
gi|167368285, gi... - gi|192289731|ref|YP_001990336.1| FAD linked oxidase domain protein [Rhodopseudomonas palustris TIE-1...
348.0 [0..25] [530..13]

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Predicted Domain #1
Region A:
Residues: [1-540]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNREMTSSFL LLTFAICKLI IAVGLNVGPS ELLRIGAIDV DGHFTVHPSD LASVSSDFGM  60
   61 LKSPEEPLAV LHPSSAEDVA RLVRTAYGSA TAFPVSARGH GHSINGQAAA GRNGVVVEMN 120
  121 HGVTGTPKPL VRPDEMYVDV WGGELWVDVL KKTLEHGLAP KSWTDYLYLT VGGTLSNAGI 180
  181 SGQAFHHGPQ ISNVLELDVV TGKGEVMRCS EEENTRLFHG VLGGLGQFGI ITRARISLEP 240
  241 APQRVRWIRV LYSSFKVFTE DQEYLISMHG QLKFDYVEGF VIVDEGLVNN WRSSFFSPRN 300
  301 PVKISSVSSN GSVLYCLEIT KNYHDSDSEI VDQEVEILMK KLNFIPTSVF TTDLQYVDFL 360
  361 DRVHKAELKL RSKNLWEVPH PWLNLFVPKS RISDFDKGVF KGILGNKTSG PILIYPMNKD 420
  421 KWDERSSAVT PDEEVFYLVA LLRSALTDGE ETQKLEYLKD QNRRILEFCE QAKINVKQYL 480
  481 PHHATQEEWV AHFGDKWDRF RSLKAEFDPR HILATGQRIF QNPSLSLFPP SSSSSSAASW 540
  541 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 61.09691
Match: 1w1oA
Description: Native Cytokinin Dehydrogenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.310870522438846 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle