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View Structure Prediction Details

Protein: gi|110743620, gi...
Organism: Arabidopsis thaliana
Length: 740 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|110743620, gi....

Predicted Domain #1
Region A:
Residues: [1-160]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTLISHRQC VTSPFLISAA SPPFPGRCFK LSSFTPPRHR RFSSLSIRNI SHESADQTSS  60
   61 SRPRTLYPGG YKRPELAVPG LLLRLDADEV MSGNREETLD LVDRALAKSV QIVVIDGGAT 120
  121 AGKLYEAACL LKSLVKGRAY LLIAERVDIA SAVGASGVAL 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.69897
Match: 1xi3A
Description: Thiamine phosphate pyrophosphorylase from Pyrococcus furiosus Pfu-1255191-001
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [161-347]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDEGLPAIVA RNTLMGSNPD SVLLPLVARI VKDVDSALIA SSSEGADFLI LGSGEEDTQV  60
   61 ADSLLKSVKI PIYVTCRGNE EAKEELQLLK SGVSGFVISL KDLRSSRDVA LRQSLDGAYV 120
  121 VNNHETQNMN ELPEKKNSAG FIKLEDKQKL IVEMEKSVLR ETIEIIHKAA PLMEEVSLLI 180
  181 DAVSRID

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.39794
Match: 1mkyA
Description: Probable GTPase Der, N-terminal and middle domains; Probable GTPase Der, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [348-740]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPFLMVIVGE FNSGKSTVIN ALLGKRYLKE GVVPTTNEIT FLCYSDLESE EQQRCQTHPD  60
   61 GQYVCYLPAP ILKDINIVDT PGTNVILQRQ QRLTEEFVPR ADLLVFVLSA DRPLTESEVA 120
  121 FLRYTQQWKK KFVFILNKSD IYRDARELEE AISFVKENTR KLLNTENVIL YPVSARSALE 180
  181 AKLSTASLVG RDDLEIADPG SNWRVQSFNE LEKFLYSFLD SSTATGMERI RLKLETPMAI 240
  241 AERLLSSVEA LVRQDCLAAR EDLASADKII SRTKEYALKM EYESISWRRQ ALSLIDNARL 300
  301 QVVDLIGTTL RLSSLDLAIS YVFKGEKSAS VAATSKVQGE ILAPALTNAK VSVMLYSLSI 360
  361 GLTGDMLVIY MRNCLENMLN GYNQILPVKG VCL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 76.69897
Match: 1dg1G
Description: Elongation factor Tu (EF-Tu), domain 2; Elongation factor Tu (EF-Tu); Elongation factor Tu (EF-Tu), N-terminal (G) domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle