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View Structure Prediction Details

Protein: NADK1_ARATH
Organism: Arabidopsis thaliana
Length: 524 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NADK1_ARATH.

Description E-value Query
Range
Subject
Range
gi|20259322 - gi|20259322|gb|AAM13987.1| unknown protein [Arabidopsis thaliana]
586.0 [0..1] [524..34]

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Predicted Domain #1
Region A:
Residues: [1-193]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTYKLNHT DSFANGDAKS LLPNPENGFT HLTSLAQSEK AVQELLLQQT PMQATDDHLV  60
   61 EFSEALRTVA KALRGAAEGK ALAQAEAAEW KRRYELERSK NVELQHKELS NGVCADESNG 120
  121 QRMEHLAKSP RLYAQEISSN GMETICSHEV LQDGGFNSFN NKLKRKASFK LSWGCKGMAN 180
  181 DQHKKEIVSF ERG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [194-524]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NISTAERSSK QISLTWESDP QTVLIITKPN STSVRVLSVD MVRWLRTQKG LNIYVEPRVK  60
   61 EELLSESSSF NFVQTWEDDK EISLLHTKVD LLITLGGDGT VLWAASMFKG PVPPIVPFSM 120
  121 GSLGFMTPFH SEQYRDCLEA ILKGPISITL RHRLQCHIIR DKATHEYEPE ETMLVLNEVT 180
  181 IDRGISSYLT NLECYCDNSF VTCVQGDGLI LSTTSGSTAY SLAAGGSMVH PQVPGILFTP 240
  241 ICPHSLSFRP LILPEHVTVR VQVPFNSRSS AWVSFDGKDR KQLEAGDALV CSMAPWPVST 300
  301 ACQVESTNDF LRSIHDGLHW NLRKTQSADG P

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 90.69897
Match: 2an1A
Description: Structural Genomics, The crystal structure of a putative kinase from Salmonella typhimurim LT2
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle