YRC Public Data Repository - Protein Structure Prediction

Protein:	GAGT2_ARATH
Organism:	Arabidopsis thaliana
Length:	578 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GAGT2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|46931352, gi\|... - pir\|\|T05002 probable gamma-glutamyltransferase (EC 2.3.2.2) T19P19.40 - Arabidopsis thaliana, gi\|727...	630.0	[0..5]	[578..1]
gi\|81247222, gi\|... - gi\|82545811\|ref\|YP_409758.1\| gamma-glutamyltranspeptidase periplasmic precursor [Shigella boydii Sb2...	616.0	[0..3]	[578..11]
gi\|117625719, gi... - gi\|117625719\|ref\|YP_859042.1\| gamma-glutamyltranspeptidase periplasmic precursor [Escherichia coli A... gi\|91212928, gi\|... - gi\|91212928\|ref\|YP_542914.1\| gamma-glutamyltranspeptidase periplasmic precursor [Escherichia coli UT... gi\|218560509, gi... - gi\|218560509\|ref\|YP_002393422.1\| gamma-glutamyltranspeptidase [Escherichia coli S88], gi\|218367278\|e...	616.0	[0..3]	[578..11]
gi\|75241461, gi\|... - gi\|75241461\|ref\|ZP_00725306.1\| COG0405: Gamma-glutamyltransferase [Escherichia coli F11], gi\|1911715... gi\|110345279, gi... - gi\|110643687\|ref\|YP_671417.1\| gamma-glutamyltranspeptidase [Escherichia coli 536], gi\|110345279\|gb\|A...	615.0	[0..3]	[578..11]
gi\|157080416, gi... - gi\|75188217\|ref\|ZP_00701484.1\| COG0405: Gamma-glutamyltransferase [Escherichia coli E24377A], gi\|157...	615.0	[0..3]	[578..11]
gi\|193061677, gi... - gi\|75260266\|ref\|ZP_00731534.1\| COG0405: Gamma-glutamyltransferase [Escherichia coli E22], gi\|1930616... gi\|75211812, gi\|... - gi\|75211812\|ref\|ZP_00711876.1\| COG0405: Gamma-glutamyltransferase [Escherichia coli B171], gi\|194427...	615.0	[0..3]	[578..11]
gi\|124528634, gi... - gi\|124528634\|ref\|ZP_01699912.1\| gamma-glutamyltransferase [Escherichia coli B], gi\|124500475\|gb\|EAY4... gi\|170018321, gi... - gi\|170018321\|ref\|YP_001723275.1\| gamma-glutamyltranspeptidase [Escherichia coli ATCC 8739], gi\|16975... gi\|190902671, gi... - gi\|75229547\|ref\|ZP_00716090.1\| COG0405: Gamma-glutamyltransferase [Escherichia coli B7A], gi\|1911673... gi\|157162923, gi... - gi\|75197373\|ref\|ZP_00707443.1\| COG0405: Gamma-glutamyltransferase [Escherichia coli HS], gi\|15716292... gi\|209914163, gi... - gi\|209920904\|ref\|YP_002294988.1\| gamma-glutamyltranspeptidase [Escherichia coli SE11], gi\|209914163\|...	614.0	[0..3]	[578..11]
gi\|188494591, gi... - gi\|75516088\|ref\|ZP_00738206.1\| COG0405: Gamma-glutamyltransferase [Escherichia coli 53638], gi\|18849...	614.0	[0..3]	[578..11]
gi\|30065275, gi\|... - gi\|30065275\|ref\|NP_839446.1\| gamma-glutamyltranspeptidase periplasmic precursor [Shigella flexneri 2... gi\|56480345, gi\|... - gi\|56480345\|ref\|NP_709217.2\| gamma-glutamyltranspeptidase periplasmic precursor [Shigella flexneri 2... gi\|110616824, gi... - gi\|110807276\|ref\|YP_690796.1\| gamma-glutamyltranspeptidase periplasmic precursor [Shigella flexneri ...	613.0	[0..3]	[578..11]
gi\|15803956, gi\|... - gi\|15803956\|ref\|NP_289992.1\| gamma-glutamyltranspeptidase periplasmic precursor [Escherichia coli O1... gi\|15833547, gi\|... - gi\|15833547\|ref\|NP_312320.1\| gamma-glutamyltranspeptidase [Escherichia coli O157:H7], gi\|13363767\|db... gi\|15833547, gi\|... - gi\|15833547\|ref\|NP_312320.1\| gamma-glutamyltranspeptidase [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|168759480, gi... - gi\|189369458\|gb\|EDU87874.1\| gamma-glutamyltransferase [Escherichia coli O157:H7 str. EC4501], gi\|168... gi\|25286694, gi\|... - pir\|\|E86011 gamma-glutamyltranspeptidase [imported] - Escherichia coli (strain O157:H7, substrain E... gi\|217321264, gi... - gi\|217325043\|ref\|ZP_03441127.1\| gamma-glutamyltransferase [Escherichia coli O157:H7 str. TW14588], g... gi\|168785263, gi... - gi\|189374575\|gb\|EDU92991.1\| gamma-glutamyltransferase [Escherichia coli O157:H7 str. EC869], gi\|1687...	613.0	[0..6]	[578..9]

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Predicted Domain #1

Region A:
Residues: [1-578]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSFMSLVRT ATIALLLIAF LQNANAVKNL QSIVAYHGAV ATDDGRCSAI GTNVLRQGGN  60
   61 AIDASVAAAL CLGVVSPASS GIGGGAFTMI KLANGTEVAY DSRETAPLSA TEDMYGDNPE 120
  121 RKKKGSLSVG VPGEVAGLYT AWTQHGKLPW KQLVEPAEKL AAEGFKISKY LYMQMNATRS 180
  181 DILADKGLSE LFVSNGELKK PGAICRNPKL ADTLSQIAEY GPKAFYNGTV GFNLVSDIQK 240
  241 AGGIITLKDL QNYNVKVKEP LSTEILGYRL LGMPPPSSGG PAMMLILNIL AQYGIPSGVS 300
  301 GPLGVHRLVE ALKHAFAVRM NLGDPDFVPE VTNVVADMLS PKFAQDLKSK INDEKTFDPK 360
  361 YYGGKWGQIK DHGTSHLSII DSERNAVSMT STINGYFGAI MLSPSTGIVL NNEMDDFSIP 420
  421 TKSGGDPDVP PPAPANFIRP GKRPLSSMTP TIVLKDGKVK AALGASGGMY IIAGTTQVYL 480
  481 NHFFLNMDPL SSVVAPRIYH QLIPNKASYE NWTTVYSDHF EIPEEIRLVL EKKGQVLTPI 540
  541 AGGTISQLIV EQSDGKSGGI SKLVAVSDPR KGGFPSGY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	173.0
Match:	2e0wA
Description:	No description for 2e0wA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits